Rippkaea orientalis PCC 8801: PCC8801_4277
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Entry
PCC8801_4277 CDS
T00806
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cyp
Rippkaea orientalis PCC 8801
Pathway
cyp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cyp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PCC8801_4277
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cyp03019
]
PCC8801_4277
03009 Ribosome biogenesis [BR:
cyp03009
]
PCC8801_4277
Enzymes [BR:
cyp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PCC8801_4277
Messenger RNA biogenesis [BR:
cyp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PCC8801_4277
Ribosome biogenesis [BR:
cyp03009
]
Prokaryotic type
rRNA helicases
PCC8801_4277
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
HEM4
DUF4404
Motif
Other DBs
NCBI-ProteinID:
ACK68200
UniProt:
B7JV67
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All DBs
Position
4493543..4495000
Genome browser
AA seq
485 aa
AA seq
DB search
MTISFQSLGLSETRANQLEAIGFTSPTEIQQKAIPLLLEGHDILGQSQTGTGKTAAYSLP
ILEQVDVKNPNVQALILTPTRELAQQVALALKDFSTERRLYILTVYGGQSIERQIRSLER
GVQIVVGTPGRVIDLLDRKKLSFEGLRWAVLDEADEMLSMGFIDDVKKILKQTPDTRSTA
CFSATMPREIRELVNQFLKSPVTVAVEQPQAAPSKIEQHLYNVPRGWSKLKALQPILELE
APESAIIFVRTKQTAAELTCKLQEAGQSVDEYHGNLSQSQRERLVYRFREGKIKLVVATD
IAARGLDVENLSHVINYDLPDNAETYIHRIGRTGRAGKTGTAISLVEPIDRRMIKQIERK
LRQQLEICQIPSRSQVESKRLEKLQRQIQESLAGERMASFLPIVRELSAEYDPQAIAAAA
LQMVYDQDCPNWMKTDWEVPEASVPKPVIKRKPSPNNNGGKYNRRSQAPQRSGGSDRKVV
THNHN
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atgaccatttctttccaaagcttaggactctctgaaacccgcgccaaccaattagaagcg
atcggctttaccagtcctactgaaattcaacaaaaagccattcctttacttttagaaggc
catgatattttaggtcaatcccaaacaggaacgggaaaaactgcagcctattcgttacct
attcttgaacaagttgatgtcaaaaatcccaacgtacaagcccttattttaacccccacc
cgcgagttagcccaacaagtagccctcgccctcaaagatttctccactgaacgccgactc
tacatcttaacggtttatggtggtcaatccattgaaagacaaatccgcagtttagaacgg
ggtgtgcaaattgttgttggaacccccggacgggttatcgatctattagaccgcaaaaaa
ctcagcttcgagggcttacgttgggcagtccttgatgaagccgatgaaatgctgagtatg
ggctttatcgacgatgtgaagaagatcctcaaacaaacccccgacacccgtagtacggct
tgtttttctgccaccatgccccgcgaaattcgggaattggtcaaccagttcctcaaatct
cccgttaccgttgcagtagaacagccccaggcagccccatcaaaaattgagcagcatctt
tataacgttccccgtggttggtcaaaactcaaagccctacagcctattttagaacttgaa
gcccccgaatcagccattatttttgtccggacaaaacagacggcggcggaattaacctgc
aagttacaagaagccgggcagagtgtggatgaatatcacggcaatttgagtcaatctcaa
cgggaacgcctagtttatcgcttccgtgaaggcaaaattaagctggtggtagcaacggat
attgcagcgcgggggttagacgtggaaaatttaagccacgtcattaactacgacttaccc
gataatgcagaaacctatattcaccgcattggacggactggacgcgcgggtaaaacggga
acggcgatctctttggtggaaccgattgatcgtcgcatgatcaagcaaattgaacgtaaa
ttacgccagcaactggaaatttgtcagattcctagtcgttcccaagtggagtcgaagcga
cttgaaaaattacaacgccagattcaagaatccttagccggagaacggatggcttctttc
ttgcccatcgtccgagaattgagtgcggaatatgatcctcaagcgatcgcagccgcagcc
cttcagatggtttacgatcaagattgtcccaactggatgaaaactgactgggaagtgcct
gaagcaagcgtacccaaacccgttattaagcgcaaaccgtctcctaataataatggtggt
aaatacaaccgtcgcagtcaagctcctcaacggtctggtggttctgatcgcaaggtagtc
acccataatcacaattaa
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