Cycloclasticus sp. P1: Q91_1180
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Entry
Q91_1180 CDS
T02265
Symbol
rne
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
cyq
Cycloclasticus sp. P1
Pathway
cyq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cyq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Q91_1180 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cyq03019
]
Q91_1180 (rne)
03009 Ribosome biogenesis [BR:
cyq03009
]
Q91_1180 (rne)
Enzymes [BR:
cyq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Q91_1180 (rne)
Messenger RNA biogenesis [BR:
cyq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Q91_1180 (rne)
Ribosome biogenesis [BR:
cyq03009
]
Prokaryotic type
rRNA processing factors
Q91_1180 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
Extensin_1
S1
HDA2-3
Motif
Other DBs
NCBI-ProteinID:
AFT67217
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Position
1252760..1255327
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AA seq
855 aa
AA seq
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MKRMLINATHTEELRVALVDGQKLYDLDIEVPAREQKKSNIYKGLITRVERSLEAVFVDY
GANRHGFLPFKEITGQAIGLDTQDIKDKNQIKEGLEIVVQVEKEERGNKGAALTTQISLA
GSYLVLMPNNPGSGGISRRIDGDNRTALREVLDQLEIPENIGLIVRTAGVGKSVEELQWD
LNYLTHLWDAISLASKDRKAPYLIFQESNFVIRSIRDYLRADIDEVLIDSEASFNLAHDF
MQQIMPQYLSRVKLYEDSVPLFTRYQIESQIETAYGREVPLPSGGSIVIDPTEALTSIDI
NSARATKGADFETTALNINLEAADEIARQLRIRDMGGLFVIDFIDMGPTKNQRMVENRIK
EAMKHDRARIQFSRISRFGLLEMSRQRIHSSLTESSLPVCPRCHGQGTIRSVESLSLSII
RILEEEAMKEHTARVVVHVPIDCATFVLNEKRSEVEQIEETHKVSLIIVPDKHLETPHYE
IERIRTKEAKQDTAASHERLQNSKTRDAKPYQREAVSQETAAVKNVMPATQRPTAPSNVA
NDGFFKRLLSKIVPSSEKQPVKKEPAKANKTSNNQQGNQQRNANPNENKNRNRNKNRNKN
RNNKDQSKQNPNTSQAANVDGSNEKTNPKPAQTKQNDAEQPSRPRRRRRSNKRSPNSDAP
KSQNTNIAESKPVESKPVESKPVESKPVESKPVESKPVESKPVEAKPTETGNTGVKNGTR
HPRRRRRTTSNKPKPLDTANGSPEANQGAATSKPVDVESKPVEAKPVEAKPVEAKPVEAK
PVEAKPVEAKPVEAKPVEAKPVEAKPVEAKPVEAKPVEAKPVEAKPVEAKPVEAKPVEAK
PVEPKPVESLTKDQQ
NT seq
2568 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaatgccactcacacagaagagttacgagtggcccttgtcgac
ggacaaaaactatatgaccttgatatagaggtacctgcaagagaacagaaaaaatcaaat
atatataaaggacttattacccgcgtagaacgtagcttagaagccgtttttgttgactat
ggtgctaaccgccatggtttccttccatttaaagaaattaccggtcaagcgattggctta
gacacccaagatataaaagacaaaaaccaaattaaagaaggtttggaaattgtcgtacaa
gttgaaaaagaagagcgtggcaataaaggcgcagcgctgacaacacaaattagcttagca
ggtagctatttagtattaatgccaaacaacccgggttcgggcggtatttcacgccgtatt
gacggtgataatagaacagctttacgcgaagtacttgatcaacttgaaattccagaaaat
attggcctcatcgttcgtactgccggtgttggtaagtcagtcgaagagctccaatgggac
ttaaactatcttacacatttgtgggatgccattagtctcgcttcaaaagaccgtaaagcg
ccctatttgatcttccaagaaagcaactttgttatccgttctattcgtgattacttacgt
gctgatattgatgaagttctgattgatagtgaagcatcatttaatttagcacatgatttt
atgcagcaaattatgccgcaatatttatcgcgcgttaaactttacgaagactccgttcct
ttgttcacgcgttaccaaatcgaaagccaaattgaaaccgcttacggacgtgaagtccct
cttccatctggtgggtctattgttatagacccaactgaagcgctcacctccatcgacatc
aactcagctcgtgctacaaaaggtgctgactttgaaacgaccgcactcaatatcaacctt
gaagctgctgatgagattgcaagacaacttcgtattcgtgatatgggcggcctattcgtc
atcgatttcattgatatggggcctactaaaaatcaacggatggtagaaaatcgcattaaa
gaagcgatgaagcatgacagagcacgtattcaattcagcagaatttcacgctttggttta
ttggaaatgtctcgtcaacgaatccattcatcgttaacagagtctagcttgcctgtttgc
ccacgctgtcatggccagggtactattcgaagtgttgagtcgctctctttatccattatt
cgcattctggaagaagaagcgatgaaagagcatacagcgcgggtagttgttcatgtcccc
attgattgcgcgacttttgttcttaacgaaaaacgttctgaagttgagcaaatagaagag
actcataaagtatcgttgattatcgttcctgataaacatcttgaaacacctcattacgaa
atagaacgaattcgtacaaaagaagcaaaacaagatacggctgccagtcatgagcgctta
caaaatagtaagactcgagatgctaaaccatatcaacgtgaagccgtcagccaagaaacg
gccgccgttaagaatgttatgcctgctacacaacgcccaacagcaccatcaaacgtagcc
aacgatggtttctttaagcgtttgttaagcaaaatagtgccgtcatcagaaaaacaacct
gttaaaaaagagccggctaaagcaaataaaacgagcaataatcagcaaggcaaccaacaa
cgcaacgctaacccaaacgaaaataaaaatagaaaccgtaataaaaacagaaataaaaat
agaaataacaaagatcagagtaagcagaacccaaatacatcacaggctgctaatgttgat
ggttcaaacgaaaaaacaaacccaaaaccagctcaaaccaaacaaaacgatgctgagcaa
ccatcacgacctagaagacgacgtagatccaataaacgttcacctaacagcgatgcacct
aagtcacaaaacactaatattgccgaatctaagcctgtagagtctaaacctgtagagtct
aaacctgtagagtctaaacctgtagagtctaaacctgtagagtctaaacctgtagagtct
aaacctgtagaagctaagcccactgaaactggtaacacaggggttaaaaacggtactcgc
caccctcgcagaagaaggcgtacaacaagcaacaaacctaagcctctcgacacggcaaat
ggctcaccagaagccaatcaaggtgcagccacttcaaagccagtagatgtagagtctaag
cctgtagaagctaagcctgtagaagctaagcctgtagaagctaagcctgtagaagctaag
cctgtagaagctaagcctgtagaagctaagcctgtagaagctaagcctgtagaagctaag
cctgtagaagctaagcctgtagaagctaagcctgtagaagctaagcctgtagaagctaag
cctgtagaagctaagcctgtagaagctaagcctgtagaagctaagcctgtagaagctaag
cctgtggagcctaaacctgttgagtcattaaccaaagatcaacagtaa
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