KEGG   Cycloclasticus sp. P1: Q91_1721
Entry
Q91_1721          CDS       T02265                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
cyq  Cycloclasticus sp. P1
Pathway
cyq03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:cyq00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    Q91_1721 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cyq03021]
    Q91_1721 (rpoC)
   03400 DNA repair and recombination proteins [BR:cyq03400]
    Q91_1721 (rpoC)
Enzymes [BR:cyq01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     Q91_1721 (rpoC)
Transcription machinery [BR:cyq03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     Q91_1721 (rpoC)
DNA repair and recombination proteins [BR:cyq03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      Q91_1721 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RPOC_hybrid Apocytochr_F_C Peptidase_M23
Other DBs
NCBI-ProteinID: AFT67755
UniProt: K0C5M5
LinkDB
Position
complement(1805534..1809754)
AA seq 1406 aa
MKDLLNFLKQQNQTEEFDAIRIGLASPDMIRSWSYGEVKKPETINYRTFKPERDGLFCAK
IFGPVNDYECLCGKYKRLKHRGVICEKCGVEVTLSKVRRERMGHIDLASPVAHIWFLKSL
PSRIALLLNMTLRDIERVLYFESFVVVDPGLTALEAGTLMTEEEHLDALEEHGDEFTALM
GAEAVDGLLKALDLNAEMESCRTDINATKSETKIKKISKRLKVLEALVESKNKPEWMILR
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLHRLLDLSAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGTNRRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPT
LKLHQCGLPKKMALELFKPFIFNKLQLRGEATTIKVAKKQVEREGPEVWDILAEVIREHP
IMLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSIEAQLEA
RTLMMSTNNILSPANGEPVIVPSQDVVLGLYYMTRERINGLGEGMAFSDVEEAARAIQSG
VVGLHSKVKIRIEEMHTDENGETTVTRRLVETTTGRAQVWNIVPKSLDFDLVNKDLTKKA
IMQLIDASYRQLGDKETVIFADQLMYLGFSNATKSGVSFGINDMVIPESKSKLIKSAQKE
VKDVESQYASGLVTNGERYNKVIDIWSHTNEQVAKAMMDNLGSDDVVDAKGETVKEKSFN
SVYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFVSTHGAR
KGLADTALKTANAGYLTRRLVDVAQDMVVLTDDCGTENGLEVTPLIEGGEVVEPLGNLIL
GRVIAQDVISAATNEIIVERNTLIDEAWVERLEEMGVDKVMVRSAISCENRKGICKMCYG
RDLARGQLVNLGEAVGVVAAQSIGEPGTQLTMRTFHIGGAASSSAAINSIQIKSEGTLTF
NDKLKTIENKENKLIVISRSGEISVVDEYGRTRENYKIPYGSELSAKEGDTLSAGAVLAT
WDPHTHPVITEVNGKVIFTDFVEGVSVQQHSDEITGLTSLVVTDAKQRGSSGKDLRPAIT
LVDEQGEPVYIPGTTIVAHYVMPAGAVVNVTDGMSVENADILARIPQESSKTRDITGGLP
RVADLFEARKTKDPAILAEMTGTVSFGKETKGKRRLVVTDKDGETKELLIPKWRHITVFE
GEHVEQGETIAEGELTPHDILRLRGVFELARYLVNEIQDVYRLQGVKINDKHIEVIIRQM
LRKVEITSGGDSSFIKGEQVEKTRFLEVNDQLEAEGKVPATADNVLLGITKASLATESFV
SAASFQETTRVLTDAAVRGTRDDLHGLKENVIVGRLIPAGTGLAHHLERRKNKAASMSPE
IVEEVTTAAAHDEAEEALKQALNMQE
NT seq 4221 nt   +upstreamnt  +downstreamnt
ttgaaagatctactcaattttttaaagcaacaaaaccaaactgaagagtttgatgccatt
cgtataggtctagcttcacctgatatgatcagatcatggtcatatggcgaggttaaaaaa
cctgaaacgattaattaccgtacatttaaaccagaaagagatggccttttctgtgcaaaa
attttcggcccagttaatgattatgaatgtctgtgtggtaaatataaacgtctaaaacat
cgcggtgttatttgcgaaaaatgtggtgtagaagtcacattgtccaaagtgagacgtgaa
cgtatgggtcatattgaccttgcctctccagttgctcatatctggttccttaagtcgcta
ccatcacgtatcgccttattactcaatatgacattacgagatatcgagcgagtattgtat
ttcgaatcatttgttgttgttgatccgggtttaactgcgcttgaagccggtactttgatg
acagaagaagagcacttagatgcccttgaagagcatggtgatgaatttacagcgctgatg
ggtgcggaagcggttgatgggcttttgaaagcccttgatttgaacgctgaaatggaatcg
tgtcgtacagatattaatgcaactaaatcagaaacaaagattaaaaaaatatctaagcgt
ctaaaagttttagaggctctggttgaatctaaaaacaaaccagaatggatgattttaaga
gtgcttcctgtacttccacctgaattaagacctttggtgccattagatgggggccgtttt
gcgacatcagacttaaacgacctttatcgccgtgttattaatagaaataaccgtttacat
cgtctattagaccttagtgcgccagacatcattgttcgcaatgagaagcgtatgcttcaa
gaatctgttgatgcattgttagataatggtagacgaggccgtgctattacaggtacgaac
cgtcgtccgttaaaatctttagctgatatgattaaaggtaagcaaggtcgtttccgccaa
aacttactaggtaaacgtgttgattattctgggcgttcagtcattgttgttggacctacc
ttaaaattacatcagtgtggtttacctaagaaaatggcgcttgaattatttaagccattt
atctttaacaaattacaattacgtggtgaagcaacaaccattaaagtagctaagaaacag
gttgaacgtgaagggccagaagtctgggatattcttgctgaagtgattcgtgagcatcct
atcatgctgaaccgtgctcctacacttcaccgtcttggtattcaagcatttgaaccaacc
ttgattgaaggtaaagcgattcaattacatccgctagtttgttctgcgtttaacgctgac
tttgacggcgaccaaatggctgtccacgttccattatcgatagaggcacagttagaagcc
agaacattaatgatgtcgacaaacaatatcttgtctccagcaaacggtgagccagtgatt
gtgccttcacaagatgttgtgttgggtttgtactacatgacacgcgaacgtatcaatggt
cttggtgaaggcatggcgttcagtgatgtagaagaagcggcacgtgctatccagtcaggc
gttgttggtcttcattcaaaggttaaaattcgtattgaagaaatgcacaccgatgaaaac
ggtgaaaccacagtgaccagacgtcttgttgaaacgacaacgggtcgtgctcaagtatgg
aatattgttccaaaatcattagactttgatttagttaataaagatttaactaaaaaagcg
attatgcagttaattgatgcgtcttatcgccaattgggtgataaagaaacggttattttc
gctgatcagcttatgtatcttggtttctcaaatgctactaagtcaggggtatcgtttggt
attaacgatatggttatcccggaaagtaaaagtaaattaatcaaatcagcgcaaaaagaa
gttaaagatgttgagagtcaatatgcatctggacttgtgactaatggcgaacgctacaat
aaagtcattgatatctggtctcatactaatgagcaagttgctaaggcaatgatggataac
ttaggtagcgatgatgtcgttgatgccaaaggtgaaacagttaaggagaaatcatttaat
tctgtttacatgatggctgattctggtgctcgtggttcagcagcgcagattagacagctt
gctggtatgcgtggcctgatggctaagccagatgggtcaattattgaaacacctattaca
gctaacttcagagaaggtttgaacgttctacagtacttcgtttctacacatggtgctcgt
aaaggtttggctgacacggctttaaaaactgcgaatgctggttaccttactcgtcgtttg
gttgatgtggcacaagatatggtcgttttaacagatgattgtggtactgaaaatggcctt
gaagtaacaccgctaattgaaggtggagaggttgttgagccactgggtaatttaatactg
ggtcgagttatcgcgcaagatgtcattagcgccgcaactaatgaaattattgttgaaagg
aatacactaattgacgaggcatgggtagaacgtcttgaagaaatgggtgtagataaggtg
atggtccgttctgcgattagttgtgaaaatcgtaagggtatttgtaagatgtgttacggc
cgcgatttagcccgaggacaattagttaacctaggtgaagcggtaggtgtggtagcagcg
cagtcaattggtgagcctggtacacagcttactatgcgtactttccatattggtggtgcg
gcgtctagttcagctgcgatcaatagtattcagataaaatctgaaggtacactaacgttt
aatgacaagctaaaaacaattgagaacaaagagaataaactgattgttatttctcgttcc
ggtgagatcagtgttgttgatgaatatggtcgtactcgtgaaaactataagataccttat
ggctctgaattatcagctaaggaaggtgacaccttatcagccggtgcggtcttagcaaca
tgggatccgcatactcaccctgttattacagaggtaaatggtaaagttatctttaccgat
tttgtagaaggtgtatctgttcaacaacattcggatgaaatcacaggcttaacatcttta
gtagtgacagatgcgaaacagcgtggaagtagcggtaaagatttaagaccagctattacc
ttggttgatgaacaaggtgagccggtctatattcctggtacaaccattgttgcgcattat
gttatgcctgcaggcgctgttgttaatgtcactgatggaatgagcgtagaaaatgctgat
attttggcgcgaattccacaagaatcaagtaagactcgtgatattaccggtggtcttcct
cgtgtggccgatctatttgaagctcgtaaaacaaaagatccggctatcttagctgaaatg
actggtacagtaagttttggtaaagagactaaaggtaaacgtcgtttagtggtcactgat
aaagatggtgaaactaaagaattgcttataccaaaatggagacacatcacagtatttgaa
ggtgagcacgtcgagcaaggtgaaaccattgctgaaggtgaattaacgccacatgatatt
ttaagattgagaggtgtttttgagttagcgagatacttggtaaatgaaattcaagatgtt
tatcgtttacaaggcgtgaagatcaacgataagcacattgaagtaattattaggcaaatg
ttaagaaaagttgaaattacgtctggtggagatagttcattcatcaaaggtgagcaagtt
gaaaagactcgtttccttgaagttaatgatcaactagaagcagaaggtaaagtacctgcg
acagctgataatgtactactcggtattacaaaggcatccttagcgactgaatcgtttgtt
tctgcagcatctttccaagaaacaacaagagtgctaacagatgcagctgtaagaggtacc
agagatgacttgcatggtttgaaggaaaacgtcattgttggtcgacttataccggctgga
acaggcttggctcatcacctagaacgcagaaaaaataaagcagcatcgatgagcccagag
attgttgaagaagtgactacagcagcagcacatgacgaggcagaagaggcgttgaagcaa
gcgcttaacatgcaagaataa

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