Cyanobacterium sp. IPPAS B-1200: A5482_006025
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Entry
A5482_006025 CDS
T10868
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
cyr Cyanobacterium sp. IPPAS B-1200
Pathway
cyr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cyr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A5482_006025
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cyr03019
]
A5482_006025
03009 Ribosome biogenesis [BR:
cyr03009
]
A5482_006025
Enzymes [BR:
cyr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
A5482_006025
Messenger RNA biogenesis [BR:
cyr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
A5482_006025
Ribosome biogenesis [BR:
cyr03009
]
Prokaryotic type
rRNA processing factors
A5482_006025
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
tRNA_lig_kinase
Motif
Other DBs
NCBI-ProteinID:
XPM69927
LinkDB
All DBs
Position
1284370..1286427
Genome browser
AA seq
685 aa
AA seq
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MSKQIIIAEKNHIAAVFAEDQIQELVVATGNQQVGDIYLGTVENVISGIDAAFVNIGDAE
KNGFIHVTDLGPLRLRRNAAAITELLSPHQKVLVQVMKEPTGNKGPRLTGNISLPGRYLV
LMPNGKGVSLSRRIKNENERNRLRALSILSKPAGMGLLVRTEAEGKAEETIIEDLEFLQK
QWEKIKQEANTVKAPALLNRDDDFIQRVLRDMYTDEVNRIVVDSDNSVKRVKKQLNDWSA
SRHPSGVVIECHQGYTSILDYFRVNAAIKEALKPRVDLPSGGYIIIEPTEALTVIDVNSG
SFTNSATSRQTVSWTNREAAVEIARQLKLRNIGGVIIVDFIDMDSRQDKLDLIQDFEKAL
KSDKAAPQIAQLTELGLVELTRKRQGKNIYELFAQTCSQCGGLGVMAHLPGHQDIETVTN
FSQPVVITKGVEKPTIDDSKPIINVSNDGAISPDEKDSASVNGARETESSRRRRRRDGLD
KDDTTNNNGTSNKNGNEGDSPKPERKERTYLSRSARRDETTLEKVVVTMSEAQQDIYAMM
GVSPLLHLDREIKDPKSVLVYVKSPDESLSQEDDNLSDKTVEKDSEVIFSSSSVDMGDDS
HNEQEKDVKVEMSLPLRLEESYEGDVEVVEEDDDNSLPVESEEEVMTKVSEPETIAEAVV
KEALNGDRPVVRTRRRRSKTGKSEE
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaacaaataataattgctgaaaaaaatcatattgcggcggtttttgcagaagat
caaattcaagagttggtagtcgctacaggaaatcaacaggtaggagatatttatttagga
acggtagaaaacgtaatttctggtattgatgcggcttttgtcaatattggtgatgcggaa
aaaaatggttttatccatgtaaccgatttaggtccccttcggttacggagaaatgcagcg
gctattacggaattattaagcccccatcaaaaggttttagttcaggtaatgaaagagcct
acgggcaataaaggccctcgtttaacgggtaatattagtttaccagggcgttatctcgta
ttgatgcccaatggtaagggggtaagtttatcccgtcgcatcaagaatgaaaatgaaaga
aatcgtctcagggcattgtctattctttctaaaccggcgggaatgggtttattggtgcgt
acggaagcggaggggaaagcggaagagactatcatcgaggatttagagtttttacagaaa
cagtgggaaaaaattaaacaggaagcaaataccgtaaaagctccagcgttgttaaatcgt
gacgatgattttattcaaagggtattacgggatatgtacacagacgaggttaatcgcatt
gtggttgactcggataatagtgttaagcgagtgaaaaaacagcttaatgattggagtgca
agtcgtcatcctagcggagtggtgattgaatgtcatcaaggttatacttccattttggat
tatttccgagtaaatgcagccattaaagaagctctgaaacctagggttgatctaccttct
ggaggttatattatcattgagccaacggaagcattgacagtgattgatgtcaactctggt
tcgtttactaactcggctacttctcgccagacggtttcttggacaaatagggaagcggcg
gtagaaattgctcgacagttgaagttgcgtaacattggtggggtaattattgtcgatttt
atcgatatggattcccgtcaggataagttggacttaattcaagattttgagaaggcgttg
aagtcggataaggcagcaccgcaaattgctcagttgacggagttgggattagtggagttg
acgaggaagcgtcagggtaaaaatatttatgagttgtttgcccagacttgttctcagtgc
gggggtttgggtgttatggctcatctaccaggacatcaagacattgaaacggtgacgaat
tttagtcagcctgtggtgattactaagggggttgagaagccaactattgatgatagtaaa
ccgattatcaatgtcagtaatgatggggctatttccccagatgagaaggatagtgcctcg
gtgaatggtgctagggaaacggaaagtagtcgccgtcgccgtcgtcgtgatgggctagat
aaggatgatacgacgaataataatggtacaagcaataagaatggtaatgagggggattct
ccgaaacctgagcgtaaggagcgcacttatttatccagaagcgcccgtcgagatgagact
acgttggagaaagtggtggtaacgatgtcggaggcacaacaggatatttatgcgatgatg
ggggtttctcctttgttacatttggatcgggaaattaaggatcctaagtcggtgttggtt
tatgtgaagtctcctgatgagtctttgtctcaagaggatgataatttatcggataaaacg
gtagagaaggattcggaggttatttttagttcttcttcggtggatatgggcgatgattct
cataatgagcaggagaaggatgttaaggttgagatgtctctgcctttgagacttgaggag
agttatgagggtgatgttgaagtggttgaggaggatgatgataatagtttacctgtggag
tctgaggaagaggtaatgacaaaggtgtctgagcctgaaaccatagcggaagcggtggtt
aaggaggctttaaatggcgatcgccctgtggtgcgtacccgtcgtcgtcgttctaaaact
ggcaagtctgaggagtaa
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