Cyanobacterium sp. IPPAS B-1200: A5482_007335
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Entry
A5482_007335 CDS
T10868
Name
(GenBank) RNA polymerase sigma factor SigF
KO
K03090
RNA polymerase sigma-B factor
Organism
cyr Cyanobacterium sp. IPPAS B-1200
Brite
KEGG Orthology (KO) [BR:
cyr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cyr03021
]
A5482_007335
Transcription machinery [BR:
cyr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
A5482_007335
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r3
Sigma70_r4_2
HTH_24
HTH_3
HTH_23
Sigma70_ECF
HTH_17
KORA
HTH_38
HTH_11
HTH_AsnC-type
LacI
HTH_Crp_2
HTH_8
HTH_Tnp_ISL3
HTH_28
HTH_30
TPR_20
Motif
Other DBs
NCBI-ProteinID:
XPM67502
LinkDB
All DBs
Position
1597925..1598701
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AA seq
258 aa
AA seq
DB search
MPIKSTTQYKTANEELFALYAENKDQRVRNRIVELNLGLVKKEASHWTNQCQENFDDLLQ
VGSLGLLRAIERFDIEKGFAFSSFALPYIRGEIQHYLRDKGYSVRIPRRCLELKNKANRV
VRELREELKRQPNDHEIARKLGVSLGEWQEVKLAYKNREPLSLDAKTSQDEDRSTLGEML
PDSQYHSFQLVEEDKIRIQGALSQLEDTTRKVLEFVFLQDLTQKETAERLGVSVITVSRR
IKKGISSMRGMIQQDEFE
NT seq
777 nt
NT seq
+upstream
nt +downstream
nt
atgcccataaaatctaccactcagtacaaaacagccaacgaggaattatttgcactctac
gccgaaaacaaggatcaaagagttcgcaatcgtattgtagagttaaatttaggtttggta
aaaaaagaggcatcccattggacaaatcaatgtcaagaaaattttgatgatttgttacag
gttggtagtctcggtttgctaagggcgatcgaaagatttgacatagaaaagggttttgct
tttagttcttttgcccttccctacattcggggagaaattcaacattatctcagagataaa
ggttattctgtcaggattccccgtcgttgtttagaattaaaaaataaagcgaatcgtgtg
gtcagagagttaagagaagagttaaaacgtcagcctaatgatcacgaaattgccagaaaa
ttaggagtatccttaggggaatggcaagaggtaaaactagcttataaaaatagagagcct
ctgagccttgatgcgaaaaccagtcaggatgaggatagatctactcttggggaaatgctc
ccagattctcagtaccatagctttcagttagtagaagaagataagatcagaattcaaggt
gctttatctcaattagaagatactacccgcaaagtattagaatttgtttttttacaagat
ttaacccaaaaagaaaccgcagagcgtttgggggttagtgttattactgtgtcccgtcgc
atcaaaaaaggtattagtagcatgagaggaatgatccaacaagatgaatttgagtaa
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