Cyanobacterium sp. IPPAS B-1200: A5482_008075
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Entry
A5482_008075 CDS
T10868
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cyr Cyanobacterium sp. IPPAS B-1200
Pathway
cyr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cyr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A5482_008075 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cyr03019
]
A5482_008075 (recQ)
03400 DNA repair and recombination proteins [BR:
cyr03400
]
A5482_008075 (recQ)
Enzymes [BR:
cyr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A5482_008075 (recQ)
Messenger RNA biogenesis [BR:
cyr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
A5482_008075 (recQ)
DNA repair and recombination proteins [BR:
cyr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
A5482_008075 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HTH_40
DEAD
Helicase_C
RecQ_Zn_bind
HRDC
ResIII
TnsD
Sigma70_r4_2
HTH_7
Helicase_Sgs1
DUF6115
GerE
HTH_36
HTH_24
HTH_38
Motif
Other DBs
NCBI-ProteinID:
XPM67634
LinkDB
All DBs
Position
complement(1762348..1764468)
Genome browser
AA seq
706 aa
AA seq
DB search
MSSLTESLKKYFGYDSFRPGQEKIVQDAIAHKDLLVIMPTGGGKSLCFQLPALLKQGLTI
VISPLISLMQDQVTALQDNGIGATYINSTLNYEETRIRQRDILAGKIKLLYLAPERLVSD
TFQPFLETVVQKIGISAFAMDEAHCISEWGHDFRQEYRQMRYLRSQFPRVPIIALTATAT
VRVQRDIIQQLNLRNPQIHRFSFNRQNLYYEVQPKETRAYSQLLHLIRSHQGSGIVYCIS
RKSTEEIAERLARDGVSALPYHAGLSDKVRSQYQTRFIRDDVRIMVATVAFGMGINKPDV
RLVVHYDLPRNIESYYQESGRAGRDGEKASCILLYSRGDKQKINYFIRQKTNPQEQKIAY
AQLAKVIEYADTNYCRRIPQLSYFGEKFKGNCGNCDNCLNPKPIEDWTIEAQKFLSCVYR
TNQRFGTKHIIDVLRGSRDKRIYEYGHHLLSTYGIGKDHTTDEWKNLATSLVYQGLVRQT
SDGYNILKINDQSKKILKGETKVYVAVKGKAEKKASRDLNSQAVEVEILLNQLKTLRKKL
ADLENIAPYVVFHDSTLKVMAQMQPDTTAKFAQLSGVNDYKLNKYGDIFISEIRTFIQQK
QLPFQLPTNTQMKTLQLYQQGLSIADIAKERGLSVTSIVSHLSELIELNQPVTIDNFVKT
EKQKVILDILKKVGNQKLKEIKEHLPDEYTYDEIKLVRAWFKRINN
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcactcacagagtctctaaaaaaatacttcggttatgacagttttcgcccaggg
caagagaaaatagtccaagatgcgatcgcccataaagaccttttagttatcatgcccaca
gggggcggaaaatcgctctgttttcagcttcctgccctcttgaagcagggtttaaccatc
gtcatatcccccctcatatccctgatgcaagaccaagttacagccctacaagacaacggc
atcggggcaacctatatcaacagcaccctcaattatgaagaaacgagaatccgtcaaagg
gacattttagcaggaaaaatcaaactcctttacctagcccccgaaagacttgttagcgat
acatttcaaccctttttagagacagtagttcaaaaaattggtatctccgcctttgccatg
gacgaagcccattgtatctcggaatggggtcatgattttcgccaagaatatcgtcaaatg
agatacctgcgtagtcaatttccccgagtgccaattattgcccttaccgctaccgccaca
gttagggtacaacgggatataattcaacagctaaacctgcgtaatcctcaaattcatcgc
ttcagttttaaccgtcaaaacctttactacgaagtgcaaccaaaagaaacccgtgcctat
agtcaactactccatcttatccgttctcaccaaggttctggtatagtttattgtatcagt
cgtaaaagcaccgaagaaatcgccgaaagactcgccagggatggggtttctgcccttcct
taccatgctggattaagtgataaagtgcgatcgcaatatcaaacccgctttatccgagac
gatgtccgcatcatggtagctactgttgcctttggtatgggtatcaacaaacccgatgtc
cgtttagtagtgcattacgacttaccccgcaacatagaaagctactatcaagaatcaggc
agggcagggagagacggcgaaaaagccagttgtattctcttatatagccgtggtgataaa
caaaaaataaactactttatcagacaaaaaactaacccccaagagcaaaaaattgcctat
gcccaactagccaaagtaatcgaatatgcagacacaaactattgtcggcgcatccctcaa
ctaagttattttggcgaaaaatttaaaggtaattgtggtaactgtgataactgcctaaat
ccaaaacctatagaagattggactatcgaagcccaaaaatttttatcctgtgtttatcgt
actaatcaacggtttggaactaaacatatcatagacgttttacgaggttcaagggataaa
agaatttatgaatatggacaccatttattatccacttacggtataggaaaagatcatacc
accgatgaatggaaaaatcttgccacctccctcgtttatcaagggttagtcagacaaact
agcgatggatataatatccttaaaataaacgatcagagtaagaaaatattaaaaggagaa
acaaaagtatatgttgccgttaaaggcaaagccgaaaaaaaagcatccagagatttaaac
tcccaagccgtggaagtagaaattttgctcaatcaactcaagacattgcgtaaaaaattg
gcagacttagaaaatattgccccctatgtcgtttttcacgattcaaccctcaaagtaatg
gcacaaatgcaacccgacaccaccgcaaaatttgcccaactttcgggggtaaacgactat
aaactaaataagtatggcgatatatttatctcagaaattagaacatttatccagcaaaaa
caattacctttccaactgcctaccaatacccaaatgaaaaccctacaactatatcaacaa
gggttaagtattgctgacatcgccaaagaaaggggtttatctgttactagcattgtctcc
catctcagtgaattaatagaattgaatcaacctgtcaccattgataattttgttaaaacg
gagaaacaaaaggttatcctagatattctcaagaaagtaggtaatcagaagttaaaagaa
attaaagaacatttacctgatgaatatacttatgatgagattaaattggttagggcatgg
tttaagagaattaataattga
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