Cyanobacterium sp. IPPAS B-1200: A5482_008530
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Entry
A5482_008530 CDS
T10868
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cyr Cyanobacterium sp. IPPAS B-1200
Pathway
cyr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cyr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
A5482_008530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cyr03021
]
A5482_008530
03400 DNA repair and recombination proteins [BR:
cyr03400
]
A5482_008530
Enzymes [BR:
cyr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
A5482_008530
Transcription machinery [BR:
cyr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
A5482_008530
DNA repair and recombination proteins [BR:
cyr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
A5482_008530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_4
Biotin_lipoyl_2
RNA_pol_Rpb1_3
Motif
Other DBs
NCBI-ProteinID:
XPM70209
LinkDB
All DBs
Position
1867742..1871605
Genome browser
AA seq
1287 aa
AA seq
DB search
MSQNKEQSKKPQVFYNRIIDKGALKKLIAKTFTEFGSARCAAVCDQLKTMGFHYATQAAV
SISVEDLKVPDAKKMMLAEAETTIKTTMNRYANGEITEVERFQKVIDTWNDTSESLKDEV
VRNFRQSDPLNSVYMMAFSGARGNISQVRQLVGMRGLMADPQGEIIDLPIKTNFREGLTV
TEYIISSYGARKGLVDTALRTADSGYLTRRLVDVSQDVIIRETDCGTHKGVWIEPMKDGD
RTLIPLGDRLLGRVLADDVVHPITGEVIALRNQSIDQDLAKLIGKTVEKVKVRSPLTCET
ARSVCQKCYGWSLAHGQWVNMGEAIGIIAAQSIGEPGTQLTMRTFHTGGVFTGEVAQRII
SPVAGKVKFDKKLKVRENRTRHGDQKLLVEVNGNLIIGDQKVLVPVNSLLAVREGDEVIQ
EQLLAEVMPQKTRSTERVTKDVASDLAGEVIFQEVDPLTTTDRQGNNTITASRNGLIWVL
SGEVYNLPPNAEPVVKNGEKIKKNSVLAESKLKTKSGGVCRLEEGSREIEIITASVSLDQ
ADIFLEHHGNQQQYVIHTPRGDRFSLKVSPGTKVQNNQIVAELIDDTFTTETGGIMRYAG
LETGRGNKKQGYEVTTEGTLIWIPEESHEINKDISLLMVEDGQYVEAGTEVVKDVFCQSS
GIVEVIQKNDILREIIIKPGKLYMDLDPEHMATLEDGTILAPGTEIMAGITTEDECISEF
VDTNEGVGLLLRPMKQYEVINTTQSPSQESLNSAGGKINLRPVLRTFFKDGERVKSVEGV
QLVTTQLVLETTEGMSADIELIEDENNEDCSRLQIVVLESVMLRRELETEPNIVTTVTVT
DGQEIMPGDVVATTQILCQENGIIRGIREGVEAIRRILVVRENDIVEIETEGALLKKEGD
FVTQGDLLAEGVKAPDSGYVMETEGNKISLRHARPYRVSTGAILHIEQGDLVQRGDNLVL
LVFERAKTGDIVQGLPRIEELLEARKPKEPAILARRPGVCQVEYKDDEAIDVKVIEDDGT
ISEYSLGPNQNIIVGDDQRVNTGDSLSDGLISPHELLEVFYDYYKEHMGAYDAALGAMQK
AQLFLVNQIQGVYQSQGIDISDKHIEVIVRQMTSKVHIDDGGDSIRLPGELVELRDIEKD
NETLSLTGGAPIEYTPKLMGITKSSLNTDSFISAASFQETTRVLTEAAIEGKSDWLRGLK
ENVIIGRLIPAGTGFNAYDENLDWEDTEVGAGNSNYLGIDDVSAEYEEQNYIIPDSEDVI
IDDKTARVLSPEDAILDDDLIDDNYQS
NT seq
3864 nt
NT seq
+upstream
nt +downstream
nt
atgtctcaaaataaagaacaaagcaaaaaaccccaagttttctataacagaattattgat
aaaggggctttaaagaaactcattgccaaaacttttactgaattcggttcagcccgttgt
gcagcggtatgtgaccagttaaaaaccatgggttttcattatgctacccaagcagcggta
tctatcagtgtggaagatttaaaagtgcctgatgccaagaaaatgatgttggcggaggca
gaaaccactattaaaactaccatgaaccgttatgctaatggggaaattactgaagtagag
cgtttccaaaaggtaattgatacttggaatgatacttctgaatctcttaaagatgaggtg
gttcgtaacttccgtcaatctgaccccctcaactccgtctatatgatggcgttttctggg
gcaaggggtaacattagccaagtacgtcagttggtgggtatgaggggcttgatggctgat
cctcaaggggaaattattgacttacctattaaaactaatttccgtgaaggtttgaccgtc
actgagtacattatttcttcctatggtgcgagaaaaggtcttgtggataccgcgttgcgt
accgctgactctggttatcttacccgtcgtttggtggatgtatctcaggatgtaattatc
cgtgaaactgattgtggtacccataaaggggtgtggattgaacccatgaaagatggcgat
cgcactttaatcccattaggtgatcgtctcttgggtcgtgtattagccgatgatgtggta
catcctattacaggggaagttattgccctacgcaaccagtctattgaccaagacttggcg
aaacttatcggtaaaaccgttgagaaagtaaaagtaagatctcctcttacctgcgaaact
gctcgttctgtgtgtcaaaaatgttacggttggtctttagctcacggacaatgggtaaat
atgggtgaggccatcggtattattgctgctcagtctatcggtgaacctggtacccagctt
accatgcgtaccttccacactgggggtgtatttactggggaagttgcccagcgtatcatc
agccctgtggcaggaaaagttaaatttgataaaaaattaaaagtaagggaaaatcgtacc
cgtcacggtgaccaaaaactcttggtagaggttaacggtaacttaatcatcggtgatcaa
aaagttctggtacctgtgaacagtttactggcggtgcgcgaaggagatgaagttatccaa
gagcaactcctagccgaagtaatgccccagaaaactcgctccaccgagagagttactaaa
gacgtagcctctgaccttgcaggggaggtaattttccaagaagtagatcccctcaccacc
accgacagacagggcaacaacaccatcacagcgtcccgtaacggcttgatttgggtactc
tctggggaagtttataaccttcctcctaatgctgaacctgtcgttaaaaacggtgaaaaa
atcaagaaaaactccgtgttagccgaaagtaagctaaaaactaagagtggtggagtgtgt
cgcctcgaagaaggtagtcgggaaattgaaattattaccgcttccgtgtccctagatcaa
gctgatatattcctagaacaccatggcaatcaacaacagtatgtaattcatacccctagg
ggcgatcgcttctccctcaaagtcagccctggcaccaaagttcaaaataaccaaatcgta
gccgaattaattgacgataccttcaccaccgaaacagggggtatcatgcgttatgcagga
ctagaaactggtcgtgggaacaaaaaacaggggtatgaggtaaccaccgaaggaactctt
atttggattcctgaagaaagtcacgaaattaacaaagacatctccttgttgatggtggaa
gatggacagtatgtagaagcaggtacagaagttgtaaaagacgtattctgtcaatctagt
ggtattgtcgaagtaattcaaaagaacgacattttaagggaaattatcatcaaaccaggt
aagctatacatggacttagatcctgaacatatggcaaccctagaggatggcaccattctt
gcccctggtaccgaaatcatggctggaatcaccaccgaagatgaatgtatcagtgaattt
gttgatactaacgaaggggtgggtttattactacgccccatgaaacagtatgaagtaatt
aacaccacccaatctccttcccaagaatccttgaacagtgcagggggcaaaattaacctt
cgtcccgtactacgtaccttcttcaaagatggggaaagggtgaaaagtgttgaaggggta
cagttagttaccactcaattagttcttgaaaccaccgaaggcatgagtgccgacattgaa
ttaatcgaagacgaaaataatgaagattgttctcgcttacaaatcgtcgtcctcgaatct
gttatgctacgtcgtgagctagaaacagagcctaacatcgttaccaccgtaaccgtcacc
gatgggcaagaaattatgccgggggatgtagttgcaaccactcaaattctgtgtcaagaa
aacggtattattcgtggtatccgtgaaggggttgaggctattcgtcgtattcttgtggtt
agagaaaatgacatcgtcgaaattgaaaccgaaggtgcattactcaaaaaagaaggagac
tttgtcacccaaggagatcttcttgcggagggagtcaaagctcctgattctggctatgtc
atggaaaccgaaggtaacaaaattagtttacgccatgcccgtccataccgtgtttctacg
ggagcaattttacacattgaacagggtgacttagttcaaaggggtgataaccttgtacta
ttggtatttgaaagggcaaaaactggggacatcgtccaaggtttaccgagaattgaagaa
ttgctagaagcccgtaaacccaaagaaccagccattcttgcccgtcgtcctggggtgtgt
caggtagagtataaggatgacgaggcgatcgatgtcaaagtcattgaagatgatggcact
atttctgagtattccttagggcctaaccaaaatattatcgtaggtgatgatcaaagggtt
aatacaggggattccttgtccgatggtttaattagccctcacgaattgttagaagtcttt
tacgactactacaaggagcatatgggagcctatgatgcggcgctaggtgctatgcaaaaa
gctcagttgttcttggttaaccagattcaaggggtttatcaatctcagggcattgatatt
tctgataaacacatcgaggtgattgtacgtcagatgacttctaaggttcacattgatgat
ggtggcgatagtattcgtttacctggggagttggtagagttgcgcgacattgaaaaagat
aatgaaactttatctcttactggtggcgctcctattgaatatactcctaagttgatgggt
attactaagtctagtttgaatactgatagtttcatctcggcggctagtttccaagaaacc
acaagggtattaactgaggcggctatcgaaggtaagtctgactggttaagaggtttgaaa
gaaaacgtgattatcggtcgtttgattcctgctggtacagggtttaacgcctatgatgaa
aatcttgactgggaagatactgaggtaggtgctggtaattctaattaccttggcattgat
gatgttagtgcggagtatgaggaacaaaattatattattcctgactctgaggatgtcatt
attgatgataaaactgctagagtgttatctcctgaggatgccattctggatgatgatttg
attgatgataattatcaaagttag
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integrated database retrieval system
