Cysteiniphilum sp. QT6929: NYP54_05775
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Entry
NYP54_05775 CDS
T09052
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cys
Cysteiniphilum sp. QT6929
Pathway
cys03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cys00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NYP54_05775 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cys03021
]
NYP54_05775 (rpoC)
03400 DNA repair and recombination proteins [BR:
cys03400
]
NYP54_05775 (rpoC)
Enzymes [BR:
cys01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NYP54_05775 (rpoC)
Transcription machinery [BR:
cys03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NYP54_05775 (rpoC)
DNA repair and recombination proteins [BR:
cys03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NYP54_05775 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
WHN66704
LinkDB
All DBs
Position
complement(1372596..1376867)
Genome browser
AA seq
1423 aa
AA seq
DB search
MKQQGKDLEFDRIRVGLASPEMIHSWSYGEVKKPETINYRTFKPERDGLFCAKIFGPIKD
YECLCGKYKRLKHRGIICEKCGVEVTQARVRRERMGHIDLACPVAHIWYLKSLPSRIGLL
LDMTLRDIERILYFEAYAVTDPGMTPFEKGQLLNEETYLDALEEYGDEFEAQMGAEAIQK
LLIDTDLNHEIETIREEIPTTNSETKLKKLTKRLKLLESFRESGNKPEWMIMTVLPVLPP
DLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELNAPDIIVRNEKRMLQESVDALL
DNGRRGRAVTGSNKRALKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPTLRLHQCG
LPKKMALELFKPFIYSKLEHYEHATTIKAAKKMVEREEAVVWDILEEVIREHPVLLNRAP
TLHRLGIQAFEPTLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLTIEAQLEARVLMMST
NNILSPASGSPVIAPTQDIVLGLYYVTREKVNAKGEGKLFADLLHVQRAYDAGVVDIHAK
IKVRLDHKVLLESGEYIDEKGIVETTVGRALLSSILPEGLPFSLINQPLTKKTVGKIIDQ
CYRRLGTKATVIFADQLMYAGYKYSTKSGISIGINDMIIPDAKVGILAEAEGQVKEISEQ
YASGLVTAGERYNKVIDIWSRANEKVAKSMMEVIAKEKVADNSGNEIEQESFNSVYMMAD
SGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLSVLQYFTSTHGARKGLADTA
LKTANSGYLTRRLVDVAQDLVIIEDDCGTQKGVTVSALIEGGDVVVPLGERLLGRVNAED
IYKPGEDEILVEAGTLLDEKVVELIEKNGVDQVIIRSSITCETRRGLCAKCYGRDLARGH
LVNMGESVGVVAAQSIGEPGTQLTMRTFHIGGAASQDTAENNVQIKNGGRIKFNNIKTVK
NREGNHVVVSRSGEISIIDKFGREREKYKVPYGAELPVNDDAQVKAGAVVATWDPHTHPV
VAEVAGHINFVDFIDGVTMKHQADEMTGLSSIVITSDSQKSGNRDIKPLVRLIDEVGEEL
CFPNTNIPASYFMPVGAILNIENGTKIEVGDVIARIPQEGSKNKDITGGLPRVADLFEAR
RPKDAAIMAETSGIVSFGKETKGKRRLIISPEDMDPIEIMIPKWRHINVFEGEHVSKGEI
ISDGPLDPHEILRLKGVHELADYIINEIQEVYRLQGVGINDKHIETVIRQMLRKVNILGA
GDSKFVDGEPVELVQVLEENEKLRAEGKLEAIYEPILLGITKASLSTESFLSAASFQETT
RVLTEASVSGQEDQLRGLKENVLIGRLIPSGTGLAHHQERKRKHLQEQEALETGPSMDEL
EMALSAALNADAEENSVDLEDLFVIGDDDLDENKRQDDEDYDE
NT seq
4272 nt
NT seq
+upstream
nt +downstream
nt
atgaaacagcaaggtaaagatttagagtttgaccgtattcgtgtcggtcttgcgtcacct
gaaatgattcactcatggtcatatggtgaagtaaaaaaaccagaaaccattaactatcgt
acattcaaaccagaaagagatggtttgttttgtgctaaaatctttggtccaatcaaagat
tacgaatgtttgtgtggtaaatacaagcgtttaaagcatcgtggcattatttgtgagaag
tgcggtgttgaagtcacgcaagcgcgtgtgcgtcgtgagcgtatggggcatattgatttg
gcttgtcctgtagcgcatatttggtatttgaaatcattaccatcgcgtattggtttgtta
ttagatatgacattacgcgatatcgagcgtattttatattttgaagcatatgcagtaact
gatcctgggatgacaccttttgaaaaaggacagttactcaatgaagaaacgtatcttgat
gcattagaagagtacggggatgaatttgaagcacaaatgggtgctgaagcaattcagaag
ttgttgattgacaccgatcttaatcatgaaattgaaacgattcgtgaagagatcccaaca
actaactcagaaactaagcttaagaaattaacaaagcgcttgaagttattagaatcattc
cgtgaatcaggtaataaacctgaatggatgattatgacagttctaccagtgttaccaccg
gatttgcgcccattagtaccattagatggcggacgttttgcaacctctgatttgaatgat
ttatatcgccgtgtaattaaccgtaacaatcgtttaaagcgtcttttagagctaaatgcg
cctgatattatcgtacgtaacgagaagcgtatgctacaagagtcagttgatgcgttattg
gataacggtcgccgtggacgtgcggtaaccggctcaaataaacgtgccttaaaatcatta
gcagatatgatcaaaggtaaacaaggtcgtttccgccaaaaccttttaggtaagcgtgtt
gactattctggacgttcagtaattaccgttggtccgacattgcgtttacaccaatgtggt
ttgccaaaaaagatggcattagagttatttaagccgtttatctattcaaagcttgagcat
tatgagcatgcgacaacgattaaagctgctaagaaaatggttgagcgtgaagaagccgtt
gtttgggatatcttagaagaagtgatccgcgagcatccagtgcttcttaaccgtgcacca
acactgcatagattaggtattcaagcatttgaaccaactttgattgaaggtaaagcaatt
caattgcacccactagtctgtacggcatttaacgctgactttgacggggatcagatggcg
gttcacgtaccattgacgattgaagcgcagcttgaagcgcgcgtgttgatgatgtcaacc
aataatatcttatccccagcaagtggctcgcctgtgatcgcgccaacgcaggatatcgtt
ctaggtctttattatgtgacgcgtgaaaaggttaatgctaaaggtgaaggtaaattattt
gctgatttattacacgttcaacgtgcttatgatgcaggtgttgttgatattcatgcaaaa
atcaaagtacgtttggatcacaaggttttacttgagtctggtgaatatattgatgagaaa
ggtattgttgaaacaacggttggacgtgctttattatcaagcatcctaccagagggctta
ccgttttcattgattaaccaaccattgactaagaaaaccgttggtaagattatcgatcag
tgctatcgccgtttaggtactaaagctacggtgattttcgctgaccaattaatgtatgcc
ggctataagtattcaacaaaatcaggtatttcaatcggtattaacgacatgattattcct
gatgcaaaagtcggtattttggctgaagctgaaggtcaggttaaagaaatttctgagcaa
tatgcaagtggtttggttactgcaggtgagcgttacaacaaagtaattgatatttggtca
cgtgctaacgagaaagttgccaaatcaatgatggaagtgattgcaaaagaaaaagttgct
gataactcaggtaatgaaatcgagcaagagtcatttaactcagtatatatgatggctgat
tcaggtgcgcggggttctgcagcacagatcagacagcttgcaggtatgcgtggtttgatg
gcaaaaccagatggctcgattattgagacgccaattacggcaaacttccgtgaaggtcta
tcggttttacaatactttacctcaacgcatggtgctcgtaagggtcttgctgatacagcg
ttaaagacagctaactcaggttacttaacacgtcgtcttgttgacgtggcacaggatctt
gtaattattgaagatgactgtggtacacaaaaaggggtaacggtttctgccttgattgaa
ggtggagatgtggttgtacctttgggtgaacgtctactaggtcgtgtcaatgctgaagat
atctataaaccaggtgaagatgagatcttggttgaagcaggcacattacttgatgagaaa
gtcgttgagttgattgagaaaaatggtgttgaccaagtgatcatccgttcatcgattacc
tgtgaaacacgccgtggcttatgtgctaaatgttatggtcgtgaccttgcgcgtggacat
ttggttaatatgggtgagtcagttggtgttgtcgcagcacaatcgattggtgagccgggt
acacagttaacgatgcgtacgttccacattggtggtgcggcgtcgcaggatactgctgaa
aacaacgttcagatcaaaaatggcggacgtattaagtttaataatattaaaactgttaaa
aaccgcgaaggtaaccacgtagttgtttcgcgttcaggtgaaattagtattattgataag
tttggacgtgagcgcgagaagtacaaagtgccatacggtgctgaattaccagtaaacgat
gatgcacaagtcaaagcgggtgccgttgttgcaacatgggatccgcatacacatccagtg
gtcgctgaggtggcagggcacattaacttcgttgactttattgatggtgtgacgatgaag
caccaagcagatgaaatgacaggactttctagtattgttattacctctgactcgcaaaaa
agtggtaatagagacatcaaaccattggtgcgcttgattgatgaggtcggtgaagagttg
tgcttcccgaatactaatattccagcaagctactttatgccagtcggagcgattttgaat
atcgaaaatggcaccaagatcgaagtcggtgacgttatcgcacgtattccacaagaaggc
tctaaaaacaaagatattaccgggggtctaccacgcgttgcagacttgtttgaagcgcgt
cgccctaaagacgctgcaatcatggcagagacttcaggtattgttagctttggtaaagag
acaaaaggcaaacgccgcttgatcatttcaccagaagatatggatccgattgaaattatg
atccctaaatggcgtcatattaacgtatttgaaggtgagcatgtttctaagggtgaaatc
atttctgacggaccattagatcctcatgaaatcttacgtttgaaaggcgtgcatgagctt
gctgattacattattaatgaaatccaagaagtttatcgcttacaaggtgtcggtattaac
gataagcatatcgagacggttattcgtcagatgttgcgtaaggttaatatcttaggcgcg
ggtgacagtaagttcgttgatggtgagccagttgaattggttcaagtcttggaagagaat
gagaagctacgtgctgaaggcaagttagaagcgatttatgagccgattttactgggtatc
acaaaggcctcattgtctacagagtcgttcctgtcagcggcgtctttccaagaaacgacg
cgcgtactaacagaagcttcagtcagtggacaagaagatcaattgcgtggcttaaaagaa
aacgtattgattggacgcttgattccatctggtacggggcttgcacatcaccaagagcgt
aagcgtaagcacttacaagagcaagaagcattagaaacaggtccatcgatggatgagctt
gaaatggcgttaagtgcggcattaaatgcagatgctgaagaaaatagtgttgatcttgaa
gatctatttgttattggtgatgacgatcttgatgaaaacaaaagacaagatgatgaggac
tatgacgagtag
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