Cysteiniphilum sp. QT6929: NYP54_07970
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Entry
NYP54_07970 CDS
T09052
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
cys
Cysteiniphilum sp. QT6929
Pathway
cys03030
DNA replication
cys03430
Mismatch repair
cys03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cys00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NYP54_07970 (dnaE)
03430 Mismatch repair
NYP54_07970 (dnaE)
03440 Homologous recombination
NYP54_07970 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cys03032
]
NYP54_07970 (dnaE)
03400 DNA repair and recombination proteins [BR:
cys03400
]
NYP54_07970 (dnaE)
Enzymes [BR:
cys01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
NYP54_07970 (dnaE)
DNA replication proteins [BR:
cys03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
NYP54_07970 (dnaE)
DNA repair and recombination proteins [BR:
cys03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
NYP54_07970 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Sp-DndD
Motif
Other DBs
NCBI-ProteinID:
WHN64982
LinkDB
All DBs
Position
1820736..1824203
Genome browser
AA seq
1155 aa
AA seq
DB search
MSARYVHLKLHSEYSLMDSIIRIKPLLEECVKRELAAVALTDMCNMFAAVKFYKAALASG
VKPIFGSEIWIEVDGAHYPLTLIAKDNQGYQVIVDLISHAYLYANRVNGIPVLPKSTLAS
FDFTHVFVLSGGVKGEIAQSYFAQKDTEAENILEAYLKIVPKENFFIELQRIGHDGEEDY
IQKAVALAQEHQVAVVATNDVRFLNEDEYSDHEVRVGIYQGYTLLDQARKSQYTPKQYLR
SADEMCELFADIPQSLSNSVYIAQNANVMFNLGDAVLPRFDIPEGMTEAEYFAEVSFKGL
DERFAFILMGKKDEDRSAIIESYKARLQVEIDVICQMGFPGYFLIVADFIQWSKDHDIPV
GPGRGSGAGSLVAYALKITDIDPIPYGLLFERFLNPERVSMPDFDIDFCMDGRDRVIEYV
AQKYGSESVSQIITYGSMAAKAVVRDVGRVLGQPYGFVDRIAKLIPNDLGIKLKDACAPE
TPLHDLCQQDETADEIIKIALKLEGLTRSVGKHAAGVVISPSKVTDFSPVYCEEGTKQLV
TQFDKKDVEEVGLVKFDFLGLRNLTIIDNALKIVNKQRHLQNESALDIALIPMTDKKTFQ
LLQNGETTGVFQLESRGMKELIKRLRPDCFEDIIALVALYRPGPLGSGMVDDFVNRKHGR
QEVSYPHPDLKDVLEETYGTILYQEQVMQIAQILANYSLGGADLLRRAMGKKIPEEMAKQ
RETFEKGAAENGIDAKLASSIFDLMEEFAKYGFNKSHSAAYALVSYQTAFLKAHYPEAFM
AAVLSSDMDNTDKVVNFISECQKMQIKLILPHINISDYYFTVNQQTELVYGLGAIKGVGL
AAIEGILAERQQNGVFKDLYDFCARVDTRKANKRVCEALIYAGAMDGFAKNRQTLIATIE
DAMKAAEQKSQMQNSGQLDLFGFSEPEASNDTARDISHINVPSWSTKDKLIFEKSVLGMF
LSGHIIDEDRIWLNHFKVQSLSRITATTRKESILLAGVVVAMAQRKTKSGKLMGVLQIDD
GCERLELVIFSELYDAVKHLISVDETVIVEGEASIDAYNDQLRINALSIEPIAKYVDKNI
KSLKLSFSQQQIATVQTLLTELVASSNEAELKSVELYIQSDDYDVTLSAQKMLLDAYLLG
AQVKVLRENNIHLMF
NT seq
3468 nt
NT seq
+upstream
nt +downstream
nt
atgtcggcacgttatgttcatttgaaactgcacagcgagtactcgttgatggatagcatt
atccgcattaaaccattgcttgaagaatgtgttaagcgcgagttggcagcggttgcgtta
actgatatgtgcaatatgtttgccgcagtgaagttttataaggcggcacttgccagtggc
gttaaaccaatatttggcagtgaaatatggattgaggttgatggtgcgcattatccgtta
acgttaattgctaaagataatcaaggctatcaagtcattgttgatttgatttcacatgct
tatctttatgccaatagagtcaatggcattcctgtgttgccaaaaagcacactagcaagc
tttgatttcacacatgtttttgtactaagcggtggggttaaaggcgagattgcgcagagt
tatttcgcgcaaaaagatactgaagcagaaaatattttagaggcataccttaaaattgtc
cctaaagaaaacttctttatcgagcttcagcgcattggtcatgatggtgaggaagattat
attcaaaaggcagttgctttagcgcaagagcaccaagtggcagtggtggcaactaatgat
gtacgtttcttaaatgaagatgagtattcggatcacgaggtgcgtgtcggtatttaccaa
ggttataccttgttagatcaggcgcgtaaaagtcaatacacgcctaagcaatacttgcgc
tcggccgatgaaatgtgtgagctatttgcggatatcccgcaaagtttgagtaatagtgta
tatatcgcacaaaatgctaatgtcatgtttaatttgggtgatgcggtgttaccacgtttt
gatatcccagagggcatgactgaagcggaatattttgccgaggtttcttttaaaggattg
gatgagcgctttgcttttattttgatgggcaaaaaagacgaagatagatccgccattatc
gaaagttataaagcacgcttgcaagttgagattgatgtgatttgtcagatgggttttcca
gggtatttcctgatcgttgcagattttattcaatggtcaaaagaccatgacattcctgtg
ggaccaggacgaggttcaggtgcgggatccttggttgcttatgcgcttaagattaccgat
attgatccgatcccttatggtttgctatttgagcgctttctaaatcctgaacgggtatcg
atgcccgattttgatattgatttttgtatggatggtcgtgatcgcgtgattgagtatgtt
gcgcaaaaatatggtagtgagagcgtctcacaaatcattacctatggatcgatggcagct
aaagccgtagtgcgcgatgttgggcgtgtgcttgggcagccttatggttttgtagatagg
attgccaagttaattcccaatgatcttggcattaaacttaaggacgcctgcgcccctgaa
acgccattgcatgatttgtgtcagcaggatgaaacagcagatgagattattaagattgca
ctaaagcttgaaggtttgacgcgcagtgtcggaaaacatgctgcaggggtcgtgatctca
ccttcaaaagtcacggacttctcgccggtttattgtgaagaaggtaccaagcaactggtc
acacagtttgataaaaaagacgttgaagaagttggcttggttaagtttgactttttgggt
ttaagaaatttaaccatcattgataatgctttaaaaattgttaataaacaaagacactta
caaaatgagtctgcacttgatatcgcgctgattccaatgaccgataaaaaaacctttcag
ctcttgcaaaatggcgagacaaccggtgtctttcagctggagtcacgcggtatgaaggag
ttgatcaaacgcctaagaccggattgctttgaagatattatcgctttggtggcgttgtat
cgccctggacctttaggctcgggcatggtagatgactttgttaatcgtaagcacggcaga
caagaagtaagctatccgcatcctgatttgaaagatgtattggaagaaacctatgggacg
attttatatcaagagcaagtgatgcagattgcgcagattctagcgaattactcgctagga
ggtgcagatttattgcgcagggcgatgggtaaaaaaatccctgaagagatggcaaagcag
cgtgagacctttgaaaaaggggctgctgaaaatggcattgacgccaagcttgcaagttca
attttcgatttgatggaagagtttgcaaaatatggttttaataaatcacattctgcggca
tatgctttggtatcttatcaaactgcctttttaaaggcgcactatccagaagcctttatg
gcagcggtattatcgtcggatatggataacacggataaggtggtgaacttcatttcagaa
tgccaaaagatgcaaataaagctcattttgccgcatattaatatcagtgattattacttt
acggtcaatcaacagactgagcttgtctatggtctaggtgcgatcaaaggcgttggtctt
gcagcaattgaagggattttggcggagcgccagcaaaatggggtatttaaggatttgtat
gatttctgtgcgcgtgttgatacgcgtaaagccaataaacgtgtctgtgaggcacttatt
tacgcaggtgcaatggatggttttgccaaaaacagacaaacacttattgcaacgattgag
gatgcaatgaaggcagctgagcaaaaaagccagatgcaaaatagtgggcagcttgattta
ttcggttttagtgaacctgaggcttcaaatgatacagcgcgtgacatatcacatattaat
gtgccaagctggagtactaaggataagttgatttttgaaaaatcagtattgggcatgttc
ttatcagggcatattatcgatgaagatagaatatggcttaaccactttaaagtacaatca
ttaagtcgcattactgcaacaacgcgtaaagagtcgattttgcttgcgggtgttgtcgtc
gcgatggcgcagcgtaaaacaaagtcaggaaaactaatgggggttttgcaaattgatgat
ggttgtgagcgcctagagttggtgatctttagtgaattatatgacgcggttaagcatttg
atctctgttgatgaaacagtgattgttgaaggtgaggcaagtatcgatgcctacaatgat
cagctacgaattaatgcgttatcaattgaaccgattgctaagtatgttgataaaaatatt
aagtcattgaaattgtctttttcacaacaacaaatagcaacagtgcagaccctgcttaca
gagttagtggcatcatctaatgaggcggaacttaaaagtgtcgagttgtatatccagtct
gatgattacgatgtcacgctttctgcacaaaagatgctgcttgatgcttatcttttgggg
gcgcaggtaaaagtcttaagagaaaataatatacatttaatgttttaa
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