Cysteiniphilum sp. QT6929: NYP54_08365
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Entry
NYP54_08365 CDS
T09052
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
cys
Cysteiniphilum sp. QT6929
Pathway
cys03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cys00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NYP54_08365
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cys03019
]
NYP54_08365
Enzymes [BR:
cys01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NYP54_08365
Messenger RNA biogenesis [BR:
cys03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NYP54_08365
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UvrD-helicase
ERCC3_RAD25_C
AAA_19
CMS1
AAA_22
HI1480
Motif
Other DBs
NCBI-ProteinID:
WHN65054
LinkDB
All DBs
Position
complement(1900466..1901692)
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AA seq
408 aa
AA seq
DB search
MSFSSLGLSNAILNALTEQGYKEPSPIQQKAIPAVLSGRDVLAAAQTGTGKTAAFTLPIL
EMLAQGPQSTANQTHALILTPTRELAAQIEANIQAYSTNLHLRSCVVFGGVKINPQMMRL
RKGADILVATPGRLLDLYEQNAIRFDRLKFLVLDEADRMLDMGFIHAIRKILTLLPKKRQ
NLMFSATFSPEIKELAKSIVRNPLEISVSPPNQAAPKVKHWIAPVDKKQKVNLLIKLIKT
HNWAQVLVFSRTKHGANHLVGKLEKADIKSAAIHGNKSQGARTKALSDFKNNEVQVLVAT
DIAARGLDISQLPCVINFDLPNVPEDYVHRIGRTGRAGATGEAISLVSADEFPQLADIEK
LLKRALERVIIDDFDPVHSLPQSNPHNYKTIKKVTPKKPKIEYRDGQK
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgtcattctcctcattaggtttaagcaacgccatcttaaacgcactcaccgagcaaggc
tataaagagccatctcccatccaacaaaaggccattcccgctgttttaagcgggcgtgat
gtacttgctgcagcacaaaccggcacgggtaaaaccgcagccttcaccttgccaatttta
gaaatgttagcacaaggaccacagtcaactgccaatcaaacgcatgcccttatcttaacg
ccaacacgcgagcttgctgctcaaatagaggcaaatattcaagcgtatagtacgaacttg
cacttacgctcttgtgtcgtatttggcggagttaaaatcaatccacaaatgatgcgctta
cgtaagggtgcagatattctcgtggcaacgcctgggcggttacttgatttatatgagcaa
aatgccattcgctttgatcgcttgaaatttttagtccttgatgaagccgatcgcatgctc
gatatgggctttattcatgctattcgcaaaattctaacgcttctacccaaaaagcgccaa
aacttaatgttctcagcaacctttagccctgagatcaaagagcttgctaaatctattgtc
cgtaatcctttagaaatctcagtaagtccacccaatcaagcagcacccaaagtcaaacat
tggatcgctcctgttgataaaaaacagaaagttaacttattgattaaactcattaaaacc
cataactgggcacaagtattggttttttcacgcactaaacatggtgccaatcatcttgtt
ggcaaacttgaaaaagcggatatcaagagtgctgcgattcatggcaacaaaagccaaggc
gcacgcaccaaagcattaagtgattttaaaaacaatgaagttcaagtattagtggcaaca
gatattgccgcacgcggcttggatatcagtcagctgccttgcgtgattaattttgattta
ccgaatgtgcctgaagattacgtccatcgcattggacgcacgggacgcgcaggcgccact
ggagaagcaatttctttggtaagtgccgatgagtttccacaactagccgatattgaaaag
ctcttaaaaagagcgctagagcgcgttattattgatgactttgatccagtgcacagccta
ccgcaatctaatcctcataattataagaccatcaagaaagtgacccctaagaagccaaag
attgaatatcgcgatggacaaaaatag
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