Cysteiniphilum sp. QT6929: NYP54_09990
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Entry
NYP54_09990 CDS
T09052
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
cys
Cysteiniphilum sp. QT6929
Pathway
cys03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cys00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NYP54_09990
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cys03019
]
NYP54_09990
03009 Ribosome biogenesis [BR:
cys03009
]
NYP54_09990
Enzymes [BR:
cys01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
NYP54_09990
Messenger RNA biogenesis [BR:
cys03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NYP54_09990
Ribosome biogenesis [BR:
cys03009
]
Prokaryotic type
rRNA processing factors
NYP54_09990
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Antiterm
Motif
Other DBs
NCBI-ProteinID:
WHN65355
LinkDB
All DBs
Position
complement(2282269..2284983)
Genome browser
AA seq
904 aa
AA seq
DB search
MKKMLINARQAEETRIAIVDNVQLMDLDIESVDREQKKANIYKAKISRIEPSLNAVFVNY
GEDKNGFLPFKEISPEYFKKTAKDQDTSLNELLDVGQELIVQIAKEERGSKGAALTTFIT
LAGCYMVLMPNNPSAGGISRRIEGDERQKLKALFDSLTIPANMGVIIRTAGVDRSADEIQ
ADLDTLTTLWDAIKRVSYQRKAPFLIHKESDITIRAIRDHLKEDIKEIIIDDEESYEDLK
RQLSMLRPSFVERLQLYKKDLPLFNAFQIEKQIESAFKREVQLPSGGSIVIDTTEALTAI
DINSARSTKGDNIEETAFATNLEAAEEIARQLRLRDLGGLIVVDFIDMAFFPNQKAVEQK
LVDALFHDRARIQMTRISKFGLVEISRQRLQASLGESVMHSCPRCAGHGFIRSIPSLALS
ILRNVHAEAVREKTNELRVQLPIDVATFLLNEKRDELSQIEEGTSTKVTLIPNANLQSPH
YSVQRIWGDAYTASRPSYDLIEDKKDVELYKAPKQDKSKQPALKSADYNQPSNSSHNSDS
KKTEDKPQANKELSKETKHNKTETKGFWAKLSAFFFSDKEASTERDARDQKPSQKSTQPK
KGQQDKADNKNNERNNQRDKPQSRDGRNNDRDNNRRDNRNNNRNQHENKPRHQQQSDERN
DHHNKSSDARDNNDNRNDRGNKNDRNDRNNRNDRNDRNDRDRGNKGNRSNNRNNQRLQVH
QSEEMVDIAALKKDSPEAQKAAKEKAIMKTISTTPEEKISVMVKEVLAEVTTLTSDQAVQ
VETHASQTRKVKYLNFEVVDTQALTAQIAKEEKLKQKELAKQAKEAQESTAEAEEIGIII
GETTLQSDDSTTDDRELETVEASDHDDNNKQERKPRPRKSARKPAHMEYSPAVDVNAQGY
ITKT
NT seq
2715 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaaatgttaatcaatgcgcgtcaagcagaagaaacgcgtattgcaatcgtcgac
aacgtgcaactgatggatttagacatcgagagtgttgacagagaacagaaaaaagccaat
atctacaaagcaaaaatttcacgcattgagccaagcttaaatgctgttttcgttaactat
ggtgaagataagaatggttttttaccgtttaaagaaatctcccctgaatacttcaagaaa
acggctaaagaccaagatacatctttaaacgagttgcttgatgtcggtcaagagttgatt
gtgcaaatcgctaaagaagagcgtggttcaaaaggtgcggctttaacaacatttatcaca
cttgccggctgctatatggtattgatgccaaataatccaagtgctggtggaatttctcgc
cgcatcgaaggtgatgagcgtcaaaaactcaaagcactttttgattcactaaccatccct
gccaatatgggcgttattatccgcacagcaggtgttgatcgctctgctgatgaaatccaa
gcggatcttgacactttgacaacactttgggatgcgattaagcgtgtttcctatcagcgt
aaagcgccttttttaattcataaagaaagtgacattactattcgcgccattcgtgatcat
ttaaaagaagatatcaaagaaatcattatcgatgatgaggaatcttacgaagatcttaag
cgccaattaagtatgctacgtcctagctttgttgagcgtttacaactttacaaaaaagat
ctgccattatttaacgccttccaaattgaaaagcaaattgaaagcgcgtttaaacgtgaa
gtgcaattgccatcgggtggttcaatcgtgattgataccacagaagcattaactgcaatc
gatattaactcagcacgctctaccaaaggtgataatatcgaagagaccgcttttgcgacg
aatttggaagctgctgaggaaatcgcgcgacaattacgtctacgtgatcttggtggtttg
atcgttgttgactttattgatatggcatttttcccgaatcaaaaagccgttgagcaaaag
ttggttgacgcgttgttccatgatcgtgcgcgcattcaaatgacgcgtatttctaagttt
ggcttagtggaaatctcacgtcagcgtttacaagcatctcttggtgaatcagtgatgcac
tcatgcccacgttgcgcaggacacggttttattcgctcaatcccatcacttgctttatct
attttacgcaatgtccatgctgaggcagtacgtgaaaaaaccaatgagttacgcgtacaa
ttaccaatcgatgttgcgacattccttttgaatgagaagcgcgatgagttatctcagatt
gaagaaggtacaagcacgaaggttaccttaatccctaatgctaacttgcagtcgccacat
tacagtgtgcaacgcatttggggtgatgcttatacggcaagtcgcccaagctatgatttg
attgaagataaaaaagatgttgaactttataaagcaccaaaacaagataaatcaaaacaa
cctgcgttaaaatcagctgattataatcagccttctaactcatctcacaatagtgacagc
aaaaaaaccgaagataagccacaagctaacaaagaattgagcaaagaaaccaagcataac
aagactgaaaccaagggtttctgggcaaaattaagcgcttttttcttcagcgataaagaa
gccagcactgagcgtgatgcacgtgatcaaaaaccatcacagaaatctacgcaacctaaa
aaaggtcagcaagataaagctgataacaaaaataatgagcgtaataatcaacgcgataag
cctcaatctcgtgatggacgcaataatgaccgtgataacaatcgtcgcgataatcgcaat
aacaatagaaatcagcacgagaataagccacgtcatcagcaacaaagtgatgagcgtaac
gatcatcacaacaaatctagtgacgcacgcgataacaacgacaatcgcaatgatcgtggt
aataagaatgatcgtaatgaccgcaacaatcgtaatgatagaaatgatagaaacgatcgt
gatagaggcaataagggcaaccgtagtaataaccgcaataatcaacgcctacaagttcat
caaagcgaagagatggttgacattgctgccctgaagaaggattcacctgaagcacaaaaa
gcagcgaaagaaaaagcgattatgaaaacgatttcaaccacacctgaagagaaaatttca
gtgatggttaaagaggtcttagccgaagttacgacactgaccagtgatcaggctgttcag
gttgaaacacatgcttcgcaaactcgcaaagttaaatacttaaactttgaagtggtggat
acgcaagcattaactgctcaaattgccaaagaagaaaagcttaagcaaaaagagcttgcc
aaacaggctaaagaagcacaggaatcaacagcagaagctgaagaaattggaattatcatt
ggcgaaaccacgctgcaaagtgatgatagcactactgatgatcgcgaacttgaaacagtt
gaagcaagtgatcatgacgataacaacaaacaagagagaaaaccgcgccctcgcaaatca
gcgcgtaaaccggcgcacatggaatactctcctgcggttgatgttaacgctcaaggctat
atcactaaaacctaa
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