Crocosphaera subtropica: cce_0113
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Entry
cce_0113 CDS
T00686
Name
(GenBank) putative transport protein
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
cyt
Crocosphaera subtropica
Pathway
cyt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cyt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
cce_0113
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cyt03019
]
cce_0113
03016 Transfer RNA biogenesis [BR:
cyt03016
]
cce_0113
Enzymes [BR:
cyt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
cce_0113
Messenger RNA biogenesis [BR:
cyt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
cce_0113
Transfer RNA biogenesis [BR:
cyt03016
]
Prokaryotic type
tRNA degradation factors
cce_0113
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
OB_HELZ2
Pr_beta_C
OB_Dis3
OB_RNR_1st
Motif
Other DBs
NCBI-ProteinID:
ACB49465
UniProt:
B1WZ99
LinkDB
All DBs
Position
complement(103262..105514)
Genome browser
AA seq
750 aa
AA seq
DB search
MEFSIATLLSHFSDNKLVAAKLLEKKLGCEDEESVEKLQIILDALELVGILEKERGKYRR
VKEDDLVEAKLRCSSKGFCFAIQDEEDAEDIYVRELHLSNAWNGDRVLVKVIKEGTRRRS
PEGEVRLILERANPSLLAQVKKEEEKYQAIPLDDRLLFELMLEQNGGNLEAAVDHLVHVS
VVRYPIGEHPPIGRVTRILGSDAEAAADTDIVCCKHDLSQTFSDEVEQAAKELPTTFDPQ
TLEKRADWREVLTFTFTEDVKRDCLPFIETAFTLEKTEDNDWQFAVHISDIAHYIQPNSL
LDKTAKKRGTTVYLGEKVLPMLPEAVTERYSLKPNQDFLTISVIMTFDKNGQLIEYSIEP
TVIRVDHQLTYPEVQSILADLEQVPDHQQPLAEKLKHLFFTLSPLVKAQRLQRGGFELQL
EPRSPYQDEGRVGTLIASSRTPIRSLLTELVVLANKAVANHIQALGIPGIYCTQPEPDWE
ELEDLLKLAQNLGLEASLESEEEITPQDYYNLTQMLGKSSHVHVLSYLLHETLKSSKYNS
HPGSHFGLAYDDCYTHCVSPGKRYVDLLIQRVLKLVFSDGRDRRTRQTKTGVNLFSSSCH
GNINWNVLPPAMQEELEETFHVLVTYLNDREKTAEEAEKDLEGLQKAEKMKERTGKVFKG
LITGVQSYGFFVEIEDLLVEGLVHVSSLKDDWYEYRSRHGCLVGRKNHIAYRLGDEVEVE
VKSVDYYRQQIDLVTVSGGSSSNNGDWNDD
NT seq
2253 nt
NT seq
+upstream
nt +downstream
nt
atggaattttcaatcgctacattattatcccacttcagtgataacaaattggtggcggcc
aaactcctagagaaaaaattgggatgtgaagacgaagaaagcgtcgaaaaattacaaatc
atcctagacgcattagaattagttggcatcctagaaaaagaacggggtaaatatcgtcga
gttaaagaagacgatctcgtagaagctaagttacgctgttcgagtaaggggttttgcttc
gctatccaagatgaagaagatgcagaagacatctatgtgagagaactccatcttagtaac
gcttggaacggcgatcgcgtcttagtcaaagtcatcaaagaaggaacccgtcgccgttcc
cctgaaggagaagttagactcattttagaaagggctaacccctctctattggcccaggtc
aaaaaagaagaggaaaaatatcaagccattcccctcgacgatcgcttactctttgaatta
atgcttgaacagaatgggggtaacttagaggcagccgtggatcatctggttcatgtctct
gtggtccgttatcccatcggtgaacaccctcccattggacgagtgacccgcattttaggc
agcgatgcagaagcggccgccgataccgatattgtctgctgtaaacacgatctttcccaa
acctttagtgacgaagtagaacaagcagccaaagaacttcctacaacctttgacccccaa
accctagaaaaacgggccgactggcgtgaggttctcacttttaccttcaccgaagatgtc
aaacgagactgtctcccctttatcgaaacggcctttaccctagaaaaaaccgaagacaat
gactggcaatttgctgtccatattagcgatattgcccactatattcaaccaaactcttta
ctggataaaaccgccaaaaaacgaggaacaacggtttatctaggggaaaaagttttaccc
atgctacccgaagccgtcaccgaacgttattctttaaaacccaatcaagattttttaacc
atctcggtgattatgaccttcgataaaaatggtcaactcatagaatatagcattgaaccc
acagtgattcgggtggatcatcaactcacctatccggaagttcagtctatcttagctgat
ttagagcaagttcctgaccaccaacaacccctagctgaaaaactcaaacatctctttttt
acccttagtcccctagttaaagcccaacggttacaacgaggaggatttgaactacaatta
gaaccacgatcgccctatcaagatgagggtagggtaggaactttaattgcctcttctcga
acccctattcgttccctgttgaccgagttggtagtcttagcaaataaagcagttgctaac
catattcaggctttaggcataccaggaatctattgtacccaacccgaaccagactgggaa
gagttagaagacctattgaaattagcccaaaatttagggttagaggcatccctcgaatcg
gaagaagaaattactccccaagattattataatttaacccaaatgttagggaaatcttcc
catgttcatgttctcagttatttactccatgaaaccctaaaatcatccaagtataatagt
caccccggatctcattttggcttagcttatgatgattgttacacccattgtgtctcccct
ggtaaacgctatgttgatttattaattcaacgggtcttaaaattagtctttagtgatgga
cgcgatcgccgtacccgacaaaccaaaactggcgttaatctcttcagtagtagctgtcat
ggtaacattaactggaatgttttacccccggctatgcaagaagagttagaagagacattt
catgtcttagttacctatctcaatgaccgagaaaaaaccgccgaagaagctgaaaaagac
ctagaaggactgcaaaaagcagaaaaaatgaaggaacgaaccggtaaagtttttaagggg
ttaattacaggggttcaatcctatggtttctttgtggaaatcgaagatttattagtagaa
ggattagttcatgtgagttctctgaaagacgactggtatgaataccgttcccgtcatggt
tgtttagtgggacgtaaaaatcatattgcttatcgtttaggagatgaagtggaagttgag
gttaaaagtgtcgattattatcggcaacaaatcgatttagtcaccgtcagtggaggaagt
tcaagcaataatggtgactggaacgatgattaa
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