KEGG   Crocosphaera subtropica: cce_0295
Entry
cce_0295          CDS       T00686                                 
Name
(GenBank) CHP_MG423-containing protein
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
cyt  Crocosphaera subtropica
Pathway
cyt03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cyt00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    cce_0295
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cyt03019]
    cce_0295
Messenger RNA biogenesis [BR:cyt03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     cce_0295
SSDB
Motif
Pfam: RNase_J_b_CASP RNase_J_C Lactamase_B RMMBL Lactamase_B_2 Anti-Pycsar_Apyc1
Other DBs
NCBI-ProteinID: ACB49646
UniProt: B1X105
LinkDB
Position
288235..290004
AA seq 589 aa
MSQTKKQSNLKIIPLGGLHEIGKNTCVLEYNDEIILIDAGIAFPTEEMHGVNIVLPDMTY
LRENRHKIKGMIATHGHEDHIGGIPYHLKQFDIPKIYGPKLAMSLLKDKLEEAGVSDRTK
LQTVSPREMVRVSPSFLVEFIRNTHSIADSFTIAIHTPLGVVIHTGDFKVDHTPVDGEFF
DFQKLAEHGEKGVLCLLSDSTNAEVPGSTPSESSVYPNLDRIIAQAEARLMITTFASSVH
RVNIILQLAQKHKRKVAVVGRSMLNVIAHARELGYIKCPDDLFVSLKAANNLPDEQVLIL
TTGSQGETLAALTRISRGSHRHIKVRPGDTIVFSANPIPGNTIAVVNTIDRLMMQGAKVI
YGRHHGIHVSGHGCQEDHKLMLALTRPKFFVPVHGEHRMLVKHAETAYKMGIPADNIVII
NNGDIVEVSEDSIGVAGKVPSGIELVDQAGVVHEHVMEDRQQLAQDGVVTVAAAISWEGN
LLTSPEVDLRGVVSKVEYSLIKQLIIRAIENILENRWNEFASGDGKTEVDWDYLQEEIEN
TLQRLVKRELRSYPLVIFLLQTPEQPSRPEPTANRKVYRRRRPTASTAS
NT seq 1770 nt   +upstreamnt  +downstreamnt
atgagtcaaactaagaaacaatccaacctaaaaattattcccttagggggactgcacgaa
atcggaaaaaacacctgtgtcttagagtacaacgacgagattattctcattgatgcgggt
attgcctttcccaccgaagaaatgcacggggtaaacattgttttacccgatatgacctat
ttacgggaaaatcgtcataaaattaaaggaatgatcgcgactcacggtcacgaagaccat
atcggtggtattccctatcatttgaaacaatttgatattcccaagatttacgggccgaag
ttggccatgtccttactcaaagataaattagaagaagcaggggtcagcgatcgcactaag
ctacaaaccgtcagtccgagagaaatggttagggtgagtccctcctttttagtcgaattc
atccgtaatactcattccattgctgatagcttcaccatagccattcatacacccttaggg
gttgtcatccacacaggagactttaaggtcgatcatacccccgtcgatggagaatttttc
gactttcaaaaattagctgaacacggggaaaaaggcgttctctgcttactgagtgactcc
accaatgcagaagtacccggcagtaccccttcagaaagttcagtctatcccaacttagat
cgcattattgcccaggccgaagcacggttaatgatcactacctttgcctcttcggtgcat
cgggtcaatatcatcttacaactagcacaaaaacataagcgcaaagtggcggtagtggga
cgttcgatgttaaacgtcatcgcccacgccagagaattaggctatattaaatgccctgac
gatctctttgtttccctcaaagcagccaataatctacccgatgaacaagttttaatttta
accaccgggtcacagggagaaaccttagcagccctaacccgtatctctagaggatctcac
cgtcatattaaagttcgtccaggggataccattgttttttctgctaaccccattccaggg
aacaccattgcggtagtaaatacaatcgatcgcctcatgatgcaaggggcaaaagtgatt
tatggccgtcatcatggaattcatgtttctggtcatggttgtcaagaagaccacaaattg
atgttagccctaactcggcctaaattcttcgttccggttcacggggaacatcgaatgctg
gttaaacacgccgaaaccgcttataaaatgggaattccggccgataatattgtcattatt
aacaacggggacattgttgaggtttccgaagatagtattggcgtagcaggaaaagttcct
tcagggatcgaattagttgatcaagccggtgtggttcacgaacacgttatggaagatcgc
caacaacttgctcaagacggtgtagtgacggtcgctgcagccattagttgggaaggcaac
ttattaacctcccccgaagtggacttacgaggtgtagtgagtaaggtggaatattctttg
atcaaacaactaattattcgagcgatcgagaatattttagagaaccgttggaacgagttc
gcttcaggggatggcaaaacagaggtagactgggactacttacaagaagaaattgaaaac
accctacaaaggttagtgaaacgggaattaagaagttatcccctggttattttcttgtta
caaaccccagaacagccttctagaccggaaccaaccgctaaccggaaagtttatcgtcgt
cgtcgtcccacggcttcaaccgcttcttaa

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