Crocosphaera subtropica: cce_0295
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Entry
cce_0295 CDS
T00686
Name
(GenBank) CHP_MG423-containing protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
cyt
Crocosphaera subtropica
Pathway
cyt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cyt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
cce_0295
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cyt03019
]
cce_0295
Messenger RNA biogenesis [BR:
cyt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
cce_0295
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
ACB49646
UniProt:
B1X105
LinkDB
All DBs
Position
288235..290004
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AA seq
589 aa
AA seq
DB search
MSQTKKQSNLKIIPLGGLHEIGKNTCVLEYNDEIILIDAGIAFPTEEMHGVNIVLPDMTY
LRENRHKIKGMIATHGHEDHIGGIPYHLKQFDIPKIYGPKLAMSLLKDKLEEAGVSDRTK
LQTVSPREMVRVSPSFLVEFIRNTHSIADSFTIAIHTPLGVVIHTGDFKVDHTPVDGEFF
DFQKLAEHGEKGVLCLLSDSTNAEVPGSTPSESSVYPNLDRIIAQAEARLMITTFASSVH
RVNIILQLAQKHKRKVAVVGRSMLNVIAHARELGYIKCPDDLFVSLKAANNLPDEQVLIL
TTGSQGETLAALTRISRGSHRHIKVRPGDTIVFSANPIPGNTIAVVNTIDRLMMQGAKVI
YGRHHGIHVSGHGCQEDHKLMLALTRPKFFVPVHGEHRMLVKHAETAYKMGIPADNIVII
NNGDIVEVSEDSIGVAGKVPSGIELVDQAGVVHEHVMEDRQQLAQDGVVTVAAAISWEGN
LLTSPEVDLRGVVSKVEYSLIKQLIIRAIENILENRWNEFASGDGKTEVDWDYLQEEIEN
TLQRLVKRELRSYPLVIFLLQTPEQPSRPEPTANRKVYRRRRPTASTAS
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atgagtcaaactaagaaacaatccaacctaaaaattattcccttagggggactgcacgaa
atcggaaaaaacacctgtgtcttagagtacaacgacgagattattctcattgatgcgggt
attgcctttcccaccgaagaaatgcacggggtaaacattgttttacccgatatgacctat
ttacgggaaaatcgtcataaaattaaaggaatgatcgcgactcacggtcacgaagaccat
atcggtggtattccctatcatttgaaacaatttgatattcccaagatttacgggccgaag
ttggccatgtccttactcaaagataaattagaagaagcaggggtcagcgatcgcactaag
ctacaaaccgtcagtccgagagaaatggttagggtgagtccctcctttttagtcgaattc
atccgtaatactcattccattgctgatagcttcaccatagccattcatacacccttaggg
gttgtcatccacacaggagactttaaggtcgatcatacccccgtcgatggagaatttttc
gactttcaaaaattagctgaacacggggaaaaaggcgttctctgcttactgagtgactcc
accaatgcagaagtacccggcagtaccccttcagaaagttcagtctatcccaacttagat
cgcattattgcccaggccgaagcacggttaatgatcactacctttgcctcttcggtgcat
cgggtcaatatcatcttacaactagcacaaaaacataagcgcaaagtggcggtagtggga
cgttcgatgttaaacgtcatcgcccacgccagagaattaggctatattaaatgccctgac
gatctctttgtttccctcaaagcagccaataatctacccgatgaacaagttttaatttta
accaccgggtcacagggagaaaccttagcagccctaacccgtatctctagaggatctcac
cgtcatattaaagttcgtccaggggataccattgttttttctgctaaccccattccaggg
aacaccattgcggtagtaaatacaatcgatcgcctcatgatgcaaggggcaaaagtgatt
tatggccgtcatcatggaattcatgtttctggtcatggttgtcaagaagaccacaaattg
atgttagccctaactcggcctaaattcttcgttccggttcacggggaacatcgaatgctg
gttaaacacgccgaaaccgcttataaaatgggaattccggccgataatattgtcattatt
aacaacggggacattgttgaggtttccgaagatagtattggcgtagcaggaaaagttcct
tcagggatcgaattagttgatcaagccggtgtggttcacgaacacgttatggaagatcgc
caacaacttgctcaagacggtgtagtgacggtcgctgcagccattagttgggaaggcaac
ttattaacctcccccgaagtggacttacgaggtgtagtgagtaaggtggaatattctttg
atcaaacaactaattattcgagcgatcgagaatattttagagaaccgttggaacgagttc
gcttcaggggatggcaaaacagaggtagactgggactacttacaagaagaaattgaaaac
accctacaaaggttagtgaaacgggaattaagaagttatcccctggttattttcttgtta
caaaccccagaacagccttctagaccggaaccaaccgctaaccggaaagtttatcgtcgt
cgtcgtcccacggcttcaaccgcttcttaa
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