Crocosphaera subtropica: cce_1788
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Entry
cce_1788 CDS
T00686
Name
(GenBank) ATP-requiring DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cyt
Crocosphaera subtropica
Pathway
cyt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cyt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
cce_1788
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cyt03019
]
cce_1788
03400 DNA repair and recombination proteins [BR:
cyt03400
]
cce_1788
Enzymes [BR:
cyt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
cce_1788
Messenger RNA biogenesis [BR:
cyt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
cce_1788
DNA repair and recombination proteins [BR:
cyt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
cce_1788
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HTH_40
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
HTH_24
GerE
HTH_28
Sigma70_r4_2
Terminase_5
HTH_23
HTH_11
TrmB
GIDA_C
Motif
Other DBs
NCBI-ProteinID:
ACB51138
CyanoBase:
cce_1788
UniProt:
B1WZI6
LinkDB
All DBs
Position
complement(1804701..1806836)
Genome browser
AA seq
711 aa
AA seq
DB search
MVSQFNSLENALKYFFGYDQFRSGQKQIINEALNNKDLLVIMPTGGGKSLCFQLPALLKS
GVCIVVSPLIALMQDQVDTLLDNGIGATFLNSTLNREELQSRENAILKGKIKLLYVAPER
LLNDNFLNFLDFLRQKVGLSGFAIDEAHCVSAWGHDFRPEYRQLKQLRFRYPQVPMFALT
ATATKRVRADIIEQLGLQNPTVHVASFDRPNLYYEVQEKSRRSYTQLLNYVRSQEGSGII
YCLSRKNVETIAFRLQQDGIEALPYHAGMYDDERAVNQTRFIRDDVRIIVATIAFGMGIN
KPDVRFVVHYDLPRNLESYYQESGRAGRDGEPANCALFFSFGDLKRLEYLIDQKIDEKEQ
RVGRQQVRQVVDYAEGTECRRSIILRYFGQQYKGKCDNCDNCNYPKPIEDWTIEAQKFLS
CVARCQERFGMSHIIDVLRGSKKKKIEKYGHHLLSTYGIGKDKSVAEWKMLGRSLIHQGF
VNETTDGFSVLKLNKYSWEIFRNERKVEIAITKSLKVKASNDYNPRKAESDLLLHQLRKL
RKHLADQNKVAPYVVFADSSLRLMAQIKPQTIEAFKKISGVTAYKAEQYGDSFVSEIREF
CQQQSLPTPLPTSSNMITLQLYQQGLTIREISERRNLKESTIYSHISELLAMNQPIDIDR
FISEEKKAMIIKCIQTIGDSSLTPLKNHLGDDYSYDEIKLVRAWYRRENKQ
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atggtatcccagtttaattccctagaaaatgccctgaaatatttctttggttacgatcaa
tttcgttcaggtcaaaaacagattattaatgaagctttaaataataaggatttattggtt
attatgcctaccggtgggggaaaatctttatgttttcaattaccggctttattaaaatcc
ggtgtctgtatagtggtttctcccttaattgctttaatgcaggatcaagttgatacttta
ttggataatgggatcggagcaacttttttaaatagtacgttaaatcgagaggaattacag
tcaagagaaaatgctattttgaagggtaaaataaagttattatatgtcgcacccgaacga
ttattaaacgataattttttgaattttttagattttttaaggcaaaaagtaggcttatct
gggtttgccattgatgaagctcattgtgtgtcagcttggggtcatgattttcgtccagaa
tatcgacagttgaaacagttacgcttccgctatccacaggttcctatgtttgctttaacc
gcaacagcaacaaaacgggtgagagcggatattattgaacaattggggttacaaaatccg
acggttcatgtagcgagttttgatcgtcctaatttatattatgaagtacaagaaaaatcg
agaagaagttatacgcagttacttaattatgttcgcagtcaagaaggatcaggcattatc
tattgtctaagtcgtaaaaatgtagaaaccattgcttttcgactacaacaagatggaatt
gaagctttaccctatcatgcaggaatgtatgatgatgaaagagcagtaaatcaaactcgt
tttattcgagatgatgtgagaattattgtggcaaccattgcctttggaatgggtattaat
aagccagatgttcgttttgtagttcattacgatttaccgagaaatttagagagttactat
caagaatctggtcgggctggaagggatggagaaccagctaactgtgccttgtttttcagt
tttggagatttaaaacgccttgaatatttaattgatcaaaaaattgatgaaaaagagcag
agagttggtcgtcaacaggtcagacaagtagtggattatgcagaagggacggaatgtaga
agaagcattattttaagatattttggacagcaatataaaggaaaatgtgataattgtgat
aattgtaactatccgaaaccgattgaagattggaccattgaagcacaaaaatttttgtct
tgtgttgctcgttgtcaagaaagatttggcatgagtcatattattgatgttctaagagga
tctaaaaagaaaaaaattgaaaagtacggacaccatttactctcaacttatggtatcgga
aaagataaaagtgttgcagaatggaaaatgttaggacgttctttaatccatcaaggtttt
gttaacgaaacaacagatggattttctgttctaaaattgaataagtatagttgggaaatc
ttcagaaacgagcgaaaagttgaaattgcgattacaaaatctttaaaggtaaaagcatca
aatgattataatcctagaaaagcagaaagcgacttattattacatcaattacgaaagtta
cggaaacatttagcagatcaaaataaagttgctccctatgttgtttttgctgattctagt
ttacgattaatggcacaaattaagcctcaaactatcgaagcatttaaaaagatttctggg
gtaacagcatataaagcagaacaatatggcgatagttttgtctcagaaattagggagttt
tgtcaacagcaaagtttaccgactcctttgcctacatctagtaatatgatcaccttgcaa
ttgtatcaacaagggttaacgattcgagaaatttcagagagaagaaacttaaaagaatcc
accatttatagtcatatttcagaattactcgccatgaatcaacccatcgatattgatcgc
tttatttcagaagagaaaaaagccatgattattaaatgtattcaaaccattggagatagt
tctttaactcccttaaaaaatcatttaggcgatgattatagttatgatgaaattaagtta
gttcgtgcttggtatcgacgggagaataaacagtaa
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