Crocosphaera subtropica: cce_3838
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Entry
cce_3838 CDS
T00686
Symbol
rpoC1
Name
(GenBank) RNA polymerase gamma-subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cyt
Crocosphaera subtropica
Pathway
cyt03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cyt00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
cce_3838 (rpoC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cyt03021
]
cce_3838 (rpoC1)
03400 DNA repair and recombination proteins [BR:
cyt03400
]
cce_3838 (rpoC1)
Enzymes [BR:
cyt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
cce_3838 (rpoC1)
Transcription machinery [BR:
cyt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
cce_3838 (rpoC1)
DNA repair and recombination proteins [BR:
cyt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
cce_3838 (rpoC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
DUF2164
Cas9-BH
Motif
Other DBs
NCBI-ProteinID:
ACB53186
UniProt:
B1WP07
LinkDB
All DBs
Position
complement(3979890..3981776)
Genome browser
AA seq
628 aa
AA seq
DB search
MKPAQDTRFDYVKIGLASPERVRQWGERTLPNGVVVGEVTKPETINYRTLKPEMDGLFCE
RIFGPSKDWECWCGKYKRVRHRGIVCERCGVEVTESRVRRHRMGYIKLAAPVTHVWYLKG
IPSYMSILLDMALRDVEQIVYFNAYVVLDPGNASNLSYKQLLTEDQWIEIEDQIYAEDSD
LYGIEVGIGAEAIQRLLQEMNLEEIAEILREEIAQSKGQKRAKLIKRLRVIDNFIATGSL
PAWMVLDVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARLQEILAPEIIVR
NEKRMLQEAVDALIDNGRRGRTVVGANNRPLKSLSDIIEGKQGRFRQNLLGKRVDYSGRS
VIVVGPKLKIYQCGLPREMAIELFQPFVIHRLIRLGLVNNIKAAKKLIIKGDPSVWNVLE
EVITGHPVLLNRAPTLHRLGIQAFEPILVEGRAIQLHPLVCPAFNADFDGDQMAVHVPLS
LESQAEARLLMLACHNILSPATGKPIVAPSQDMVLGCYYLTAENPQSQKGNGRYFGNIDD
AVKAFEHGLVDLHAYVWLRSEDPNEEVVTDLPDTEVLKTETLEDGSVIKHYRERRVREID
GEAVSQFIRTTPGRIIYNKTIQDALTVA
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccagcacaagatacaagattcgactatgtaaaaattgggttagcttcccccgaa
cgggttcgccaatggggagaaagaacccttccaaatggggttgtggtcggagaagtgacc
aaacccgaaaccatcaactacaggactttaaaaccggagatggacggactattttgtgag
cggatttttggtccgtcgaaagactgggaatgttggtgtggtaaatataaacgggttcgt
caccgaggtattgtttgcgaacggtgtggagtcgaagttactgaatcccgtgttcgtcgt
catcgcatgggctatattaaattagcagcccctgtgactcatgtctggtatctcaaagga
attcccagttacatgagtattttactggatatggctttacgggatgtagaacaaattgtt
tactttaacgcctatgtggttttagatccggggaatgccagtaatttaagttataagcaa
ctcttaactgaagatcaatggattgaaattgaagatcagatttatgccgaagattccgac
ttatatggcatagaagtgggtatcggtgcagaagccattcaacggttactgcaagaaatg
aacctagaagaaattgccgaaatcttacgggaagaaatcgcccaaagtaaaggacagaaa
cgggccaaactgattaaacgtttacgggtaattgataactttatcgctacaggttcatta
cctgcgtggatggtattagacgttatccccgttattcccccagatttacgtcccatggta
cagttagacgggggtcgttttgccacctcagacctcaatgacctttatcgacgggtaatt
aaccgtaataaccgtttagcccgcttacaagagattctcgcaccggaaatcattgtccgt
aacgaaaaacggatgttacaagaagcagtagatgctttaattgataacggaagacgaggc
cggactgttgttggggctaacaatcgtccattgaaatccctatccgatattattgaagga
aaacaagggcgtttccgtcaaaacctcttaggaaaacgggtggactattctggtcgttct
gtaatcgtggtggggccaaaactgaaaatttatcaatgtggcttaccccgtgaaatggcg
atcgaattattccaacccttcgtgattcatcgtcttattcgcttaggattagtcaataat
atcaaagcggccaaaaagctgattattaaaggtgatcccagtgtttggaacgtcctagaa
gaagtgattaccggacaccctgtcctcttaaaccgcgccccaaccctacaccgtttaggg
attcaagcctttgaacctattttagtggaaggtcgggctattcagttacatcctttggtt
tgtcctgcgtttaacgctgactttgacggggaccaaatggcggttcacgttcctctgtct
ttggaatcccaagccgaagcgagactgttgatgttagcttgtcataatatcctatctcct
gcaacgggtaagcccattgttgcaccctctcaggacatggtactcggctgttattattta
actgcagaaaacccccaatcccaaaaaggaaacgggcgttattttggcaatatcgacgat
gcagttaaagcatttgaacatggactggtagacttacacgcctatgtgtggttacgttca
gaagatcccaacgaagaagtcgtcacagacctgccggatactgaggtcttaaaaacagaa
accttagaagatggtagtgttatcaaacattatcgagaacgtcgggtgagggaaatagac
ggtgaggcggtttctcaatttattcggactacccctggacggattatttataacaagact
atccaagatgctttaactgtcgcctaa
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