Candidatus Atelocyanobacterium thalassa: UCYN_04860
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Entry
UCYN_04860 CDS
T01159
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
cyu
Candidatus Atelocyanobacterium thalassa
Pathway
cyu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cyu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
UCYN_04860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cyu03019
]
UCYN_04860
03016 Transfer RNA biogenesis [BR:
cyu03016
]
UCYN_04860
Enzymes [BR:
cyu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
UCYN_04860
Messenger RNA biogenesis [BR:
cyu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
UCYN_04860
Transfer RNA biogenesis [BR:
cyu03016
]
Prokaryotic type
tRNA degradation factors
UCYN_04860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
KH-I_KHDC4-BBP
KH_2
EXOSC1
KH_KhpA-B
Motif
Other DBs
NCBI-ProteinID:
ADB95215
UniProt:
D3EP15
LinkDB
All DBs
Position
complement(536081..538228)
Genome browser
AA seq
715 aa
AA seq
DB search
MQEFDKSISFDGRDIRLKLGLLAPQAGGAILIQSGDTAVLVTATTSKGREGIDFLPLTVD
YEERLYAAGRIPGGFLRREGRPPERVTLISRLIDRPLRPLFPNWFRNDIQIIATTLSMDE
EVPPDVLAVTGASIAVIQAQIPFFGPMAAVRVGLVGDDFIINPTYREVEDGDLDLVVAGS
PDGVVMIEAGANQLPEQDVIEAIDFGYEAVRDLIGAQQEIMEELGISLVKADPPVKNEVL
EKFISDQSSESIKKVLVQYNLGKAERDIALDEIKETTINEIITNLSEEDSIKIAAKEDPK
AVNNLYKGLTKKLMRSQIVDNEIRVDGRKLDEVRPITCDVGILPPRVHGCGLFNRGLTQV
LSLATLGTPGDAQDLGDDLHPEDEKRYLHHYNFPPYSVAETKPMRSPGRREIGHGALAER
ALLPVLPQQEEFPYVVRVVSEVLSSNGSTSMGSVCGSTLALMDAGVPIAKPVSGAAMGLI
KEGEEVRILTDIQGIEDFLGDMDFKVAGTDSGITALQMDMKITGLSMDVIAKAIEQALPA
RLHILEKMLSTIDKPRSELSTFAPRLLTMKIDPEMIGLIIGPGGKTIKGITEQTGSKIDI
SDDGMVTIAAIQAKKAEKAKSIIFNMTRKLNEGEVYLGRVTRLIPIGAFVEVLPGKEGMI
HISQLAERRVGKVEDEVAVGDEVVVKVREIDNKGRLNLTRLGIHPDEASAVRKIV
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atgcaagaatttgataaatcaatatcttttgacggacgagatattcgactaaagctagga
ttattggctcctcaagcaggtggagcaattctaattcagtccggagatacggcagttcta
gtaacagcaacaacatcaaaaggaagagaaggtattgattttttgcctttaactgtagat
tatgaagaaagactttatgctgcaggacgaattccaggaggatttttacgaagagaagga
cgtcctccagaaagggtaactcttattagtagactaattgatcgacctttacgtccttta
tttcctaattggtttcgaaatgatattcagattattgctactactttatctatggatgag
gaagtgccccctgatgttctggctgtgacaggtgcttcgatagctgtaattcaggctcag
attcctttctttgggcccatggcagctgtcagggtaggtttagtaggagatgattttatt
attaatcctacttaccgagaagtagaagatggagatcttgatctagtagttgcaggaagt
cctgacggtgttgtcatgatcgaagctggagctaatcagcttccagaacaagatgttatt
gaagctattgattttggctatgaggcggtaagagatctaattggggcacaacaagaaatt
atggaagaactgggaatatcattagtaaaagctgatcccccagtaaaaaatgaagttcta
gaaaaattcattagcgatcagtcgtctgaatctatcaaaaaagttttagttcaatataat
cttggtaaggctgaaagagatatagctcttgatgaaatcaaagaaacaactattaatgaa
ataataactaatctttcagaagaggattcaataaaaattgctgctaaggaagatcctaaa
gctgtaaataatctttataaaggtttaaccaaaaagttaatgcgatcgcaaattgttgat
aacgagattcgcgtggatggtagaaaacttgatgaagttcgtcctattacttgtgatgta
ggtattctacctccaagggtacatggttgtggattatttaatagaggtttaactcaagta
ttatctttggcaacccttggtactccaggcgatgcacaagatttaggtgatgatttacat
cctgaagatgaaaagcgctatttacatcactataattttcctccttattctgttgcagag
actaaaccaatgagatctccaggaagaagagaaattggacatggagctttggcagaacgt
gctcttctgcctgtattgccccaacaagaagaattcccttatgtagttagagttgtatca
gaggttttatcctctaatggctctacatcaatgggatctgtttgtggatcaactttagct
ttaatggatgctggagtacctattgccaaaccagttagtggagcagctatgggacttatc
aaagagggagaagaagtacgtattcttacggatatacaaggaatcgaagatttcttagga
gatatggacttcaaagtagctggaactgatagtggtattacagctttacaaatggatatg
aaaattactgggttatcaatggatgttatagcaaaagctattgaacaggctttacctgcc
cgtctacatattcttgaaaaaatgttgtcaactattgataagccacgttcagaattatca
acatttgctcctcgactattaaccatgaaaattgatcctgaaatgatagggttaattatt
ggtccaggtggtaaaactattaaaggtattacagaacaaaccggttcaaaaatcgatatt
tctgatgatggtatggttactattgctgctattcaagcgaaaaaggcagagaaagcaaaa
agtattatctttaatatgacacgcaaactaaacgaaggagaagtttacttgggtcgcgtt
actcgccttatccctataggagcttttgtagaagtcttgccaggcaaggaaggtatgatt
catatttctcaattagccgaaagaagagtaggtaaagtagaagatgaagttgctgttgga
gatgaagttgtagttaaagtacgtgaaatcgataacaaaggacgattaaatctgacacgt
ttaggtattcatccagacgaagcttctgctgttagaaaaatagtttaa
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