Candidatus Atelocyanobacterium thalassa: UCYN_05040
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Entry
UCYN_05040 CDS
T01159
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
cyu
Candidatus Atelocyanobacterium thalassa
Brite
KEGG Orthology (KO) [BR:
cyu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cyu03032
]
UCYN_05040
03400 DNA repair and recombination proteins [BR:
cyu03400
]
UCYN_05040
Enzymes [BR:
cyu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
UCYN_05040
DNA replication proteins [BR:
cyu03032
]
Prokaryotic type
DNA Topoisomerases
UCYN_05040
DNA repair and recombination proteins [BR:
cyu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
UCYN_05040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Toprim_4
HC2
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
ADB95233
UniProt:
D3EP33
LinkDB
All DBs
Position
complement(556310..558931)
Genome browser
AA seq
873 aa
AA seq
DB search
MSTLVIVESPTKARTIRNFLPSEYQVEASMGHIRDLPASASEIPASYKGKSWANLGVDVE
NNFDPIYVIPKDKKKVVQGLKTALKSVDELILATDEDREGESISWHLLQILKPKVPIKRM
VFHEITKDAIQESLENCRDINENLVHAQETRRVLDRLYGYTLSPLLWKKIAWGLSAGRVQ
SVAVRLLVQKERERLSFQSGEYWNLKVLLKKEEIFFEAKLISISGKKIAIGSDFDPKTGG
LAGNRNIILLDEQEANILKEQLKDTNKTWNVVKVEEKKVSNKPFPPFTTSTLQQESNRKL
GISARDTMRIAQKLYEEGYITYMRTDSVNLSSEAINAARKCVKKKYGEEFLSPHPRKYTT
VSKGAQEAHEAIRPAGNIFLIPKETGLTDQRLSLYDLIWKRTVACQMADAQLTQVSVIIA
VENAEFRAYGKRIDFPGFFRAYVEGSDNPEIALENQEIILPYLQEGEHLKCEQVDAISHK
TQPPARYTEASLVKILEKEGIGRPSTYASIIGTICDRGYSQMRSKALVPTFTAFAVVSLL
ETYFPELVDPMFTSKMEQALDEIATGEVLRVPYLEKFYFGDKGLDTQVKVRTDEINPSLA
KAINLHNLDTTIKIGKFGPYIEVEQNEKIITASIPADLTPSDLNIDQVTKILKQKTEGPE
KIGLHPDIGEPIYLLIGSYGPYVQLGEITEENKKPKRTSLPKSIKPEDVNLEIALGLLAL
PRLLGTHPDTQASIKVNIGRFGSYVVHDQGKEGKDYRSLKKEDDLLTISFERALELLSQP
KLTRGRRTKKPLKELGLHPEDNEPINIYEGPYGVYINHKKINVSLSKKDKIDDITLEKAL
KLLLKKTPAKKTPAKKTPAKKATAKKATAKKIN
NT seq
2622 nt
NT seq
+upstream
nt +downstream
nt
atgtcaactcttgttattgttgaatcacctactaaagctcgtacgataagaaactttttg
cctagtgaatatcaggttgaagcttccatgggccacatacgagatcttccagcctcagca
agtgagattcctgcttcttataaaggtaaaagctgggctaacttaggcgttgatgtagaa
aataatttcgatcctatttatgttattccgaaagataaaaagaaagtagttcaagggtta
aaaacagctctaaaaagtgtggatgagttgatattagctacagatgaagatagagaagga
gaaagtattagttggcatctactacaaatcttaaaacctaaagtacctattaagcgtatg
gtttttcatgaaattactaaagatgcaattcaagaatctttagaaaactgtcgtgatatt
aatgaaaacttagttcatgctcaagaaacaaggcgtgtactagatcgtttatatggctat
acactttcccctttactatggaaaaaaattgcttggggattatctgctggtagggtacag
tcagtagcagtacgtttattagtccaaaaagaacgagagcgtcttagttttcaatctggt
gaatattggaatctaaaagtcttactaaaaaaagaagaaatcttttttgaagctaaatta
ataagtatttctggaaaaaaaattgctataggttcagactttgatcctaaaactggtggc
ttagctggcaatcgaaatattattctccttgatgagcaagaagctaatattctaaaagaa
caattaaaagatacaaataagacatggaatgtagtcaaggttgaagaaaagaaggtaagt
aacaagccctttcctccttttacaacttcaactttacagcaagaatctaatcggaaactg
ggtatttcagcacgagatactatgcgaatagctcagaagctatatgaggaaggttatatt
acatatatgcgaacagattcagtaaatttatctagtgaagctatcaatgcagctagaaaa
tgtgtgaagaagaagtatggggaagaatttttaagtccacatccgcgcaaatatactact
gtaagcaaaggagcgcaagaagctcatgaagcaattcgtccagcaggcaatattttcctt
atacctaaggaaacaggattaacggatcaaagactttctctttatgatcttatttggaag
cggactgtagcatgtcaaatggctgatgctcaactaacacaagtttcagtaattatagca
gtagaaaatgcagaatttcgagcttatggaaaacgtatagattttccaggattttttcgt
gcctatgttgaaggatcagataaccctgaaatagcattagaaaatcaagaaatcatactt
ccatatcttcaagaaggtgaacacctcaaatgcgagcaagtagatgctataagtcataaa
acccagcctcctgcccgttatactgaagcgtctctagtaaaaatattagagaaagaagga
atcggccgtcctagtacctatgctagtattattggaaccatatgtgatcgtggttattcc
caaatgaggagcaaggctttagttcctacttttacagcatttgctgttgttagcttgtta
gaaacctactttcctgaactagtagatcctatgtttacttcaaaaatggaacaggctcta
gatgaaattgcaacaggagaagtactaagagttccttacttagaaaaattttactttggt
gataaaggtttagatactcaagtcaaagttcgtactgatgaaataaatccaagtttagct
aaagctattaatcttcacaatttagatacgacaattaaaattggtaagtttggaccttac
atagaagtagaacaaaatgaaaaaataataactgcttctattcccgcagacttgactcca
tccgatttaaatatcgatcaagtaacaaaaatattaaagcaaaaaactgaaggtccagaa
aaaattggattacatcctgatattggtgaacctatttatttattaattggtagctatgga
ccatatgtccaattaggagaaattacagaagaaaataagaagcctaagagaacttctctt
cctaaaagtattaaacccgaagatgtaaatttagaaattgcactgggcctattagcatta
cctcgtttattaggaactcatccagatactcaagctagtattaaagtcaatataggaaga
tttggatcttatgtagtacatgatcaagggaaagaagggaaagattatagatcgctcaaa
aaagaagatgatttattaactatctcttttgagagagcacttgaactactctctcaacca
aaacttactagaggaagaagaacaaaaaaaccactaaaagagttaggacttcatcctgaa
gataatgaacctattaatatctacgaaggaccttatggtgtttatataaatcataaaaaa
ataaatgtaagcttatctaagaaagataaaattgatgatataactttagaaaaagcatta
aaattattattgaagaaaacacctgccaagaaaacacctgccaagaaaacacctgccaag
aaagcaactgccaagaaagcaactgccaagaaaatcaactga
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