Candidatus Atelocyanobacterium thalassa: UCYN_05290
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Entry
UCYN_05290 CDS
T01159
Name
(GenBank) exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
cyu
Candidatus Atelocyanobacterium thalassa
Pathway
cyu03410
Base excision repair
cyu03430
Mismatch repair
cyu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cyu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
UCYN_05290
03430 Mismatch repair
UCYN_05290
03440 Homologous recombination
UCYN_05290
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cyu03400
]
UCYN_05290
DNA repair and recombination proteins [BR:
cyu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
UCYN_05290
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
UCYN_05290
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
UCYN_05290
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Toprim
Motif
Other DBs
NCBI-ProteinID:
ADB95258
UniProt:
D3EP58
LinkDB
All DBs
Position
591888..593840
Genome browser
AA seq
650 aa
AA seq
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MKLPNQRWDVISPNPEKIQLLAEEMKISDLIVKVILNRGIDTSSLARIYLNPNEEILPPP
LAEFPDLYKSISLLTRAIKEKSKIAICGDYDADGMTSTSLLLRALKYFGGDIHYKIPDRI
KDGYGINTQIVENLAKNGVELILTVDNGISAYDPIQRAVELGVNVIITDHHDIPKKLPPA
DAILNPKLLSHESPYSGLAGVGVAYILALTLAQTLNKTEGIIASLLELFTLGTIADLAPL
IGVNRRWLKQGLKQLPNSQLPGIQALIKVSGISDEQKQLRSDDIGFKLGPRINAVGRIGD
PKVAIELLTTDDPELALEKALECEEINNVRKSLCEKIEKEAINLVENTPLNYQEKRVLVV
IKDEWHHGVIGIVASRLVERYGVPVFIGTYEENDIEKIRGSARGIPEFDVFNALQYCDDL
LDKFGGHKAAGGFGLKRKYLNSFEKRLSEFSHQHLKLHHIKPLIKIDSEINFKDINHNLY
ETLDSLQPWGIGNAIPIFWTPNVIILKQKIIGDNHLKISLVQNDGEKIEAIAWRFGTYYP
LPKQLDIAYKLSKNSWNGKSNIQLEIVGIRLPESINKEFQSTFEFNGRQYICSIKDKILK
IKNLQGKTLSIYKGQRKGLLENGYEKIKTIDVTHQPYYTIVKMALHSLKL
NT seq
1953 nt
NT seq
+upstream
nt +downstream
nt
atgaaactaccaaatcaaagatgggatgttatttcgcctaatcctgaaaaaattcaacta
ttagctgaagaaatgaaaatctctgacttaatcgtcaaggtaattttaaatcgaggaata
gacacatcaagtttagctcgtatttatttaaatcctaatgaagaaattttacctcctcct
ctagcagaatttccagacttatataaaagtattagccttttaacaagggctattaaagaa
aaaagtaagattgcaatttgtggggattatgatgctgatggtatgaccagcacttctcta
ttgctgagggctttgaaatatttcggaggagatattcactataaaattcctgacagaatt
aaagatggttacggtattaatacacaaattgtagaaaatctagctaaaaatggggtggag
ctaatattaacggtagataatggtatttcagcttatgatccaattcaaagagccgtagaa
ctaggtgtaaatgttattattacagatcatcatgacatacctaaaaagctacctcctgca
gatgctattttaaatcctaagctattatctcatgaatcaccttatagtgggttagctgga
gtaggagttgcatatattttagctttaacactcgctcaaactttaaataaaacagaaggc
attatagcttctttattagagctttttacattaggtactattgcagatttagctcctcta
attggggttaatcgtcgatggcttaagcagggtttaaaacaattacctaattcccaatta
ccaggtattcaagctttaataaaagtttcaggtattagtgatgagcaaaagcaattaaga
tcagatgatattggctttaaactaggtccaagaattaacgctgtagggcgtattggtgat
cccaaagttgctattgagttattgacaactgatgatcctgagcttgcattagaaaaagca
ttggaatgtgaagaaattaataatgtaagaaaatctttatgtgaaaagattgaaaaagaa
gccataaatttagtagaaaatactcctttaaattatcaagaaaaaagagttttagtagta
attaaagatgaatggcaccatggagtaatcggtattgttgcttctcgcttagttgaacgc
tatggcgtaccagtttttattggaacttatgaagaaaacgatatagagaaaattcgtgga
tcagctagaggaattccagaatttgatgttttcaatgctttgcaatactgtgatgactta
ttagataaatttggaggacataaagctgcaggcggatttggcttaaaacggaaatacttg
aattcttttgaaaaaagacttagtgagttttctcatcaacatcttaagctacaccatatt
aaacctctaattaaaatcgatagtgaaatcaattttaaagatataaatcataatctatat
gaaacacttgattctcttcaaccttggggaattggaaatgctatccctattttttggaca
cctaatgtaataatattaaagcaaaagattataggagataaccatctcaaaatatcacta
gttcaaaatgatggtgaaaagattgaggctatagcatggcgatttggaacatattaccct
ttaccaaagcaattagatatagcatataaattgtctaagaattcttggaacggaaagagc
aatattcagctagaaattgtaggtatacgtctccctgaatctataaataaagaatttcaa
agtacattcgaatttaacggtagacaatacatttgttctataaaagataaaatactaaaa
attaaaaatttacaaggaaagactttatctatctataaaggtcaaaggaaaggattatta
gaaaatggttatgaaaaaattaaaacaattgatgttacacatcagccgtactacacaata
gttaaaatggctttacattctttaaaattataa
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