Candidatus Atelocyanobacterium thalassa: UCYN_05890
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Entry
UCYN_05890 CDS
T01159
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cyu
Candidatus Atelocyanobacterium thalassa
Pathway
cyu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cyu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
UCYN_05890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cyu03021
]
UCYN_05890
03400 DNA repair and recombination proteins [BR:
cyu03400
]
UCYN_05890
Enzymes [BR:
cyu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
UCYN_05890
Transcription machinery [BR:
cyu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
UCYN_05890
DNA repair and recombination proteins [BR:
cyu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
UCYN_05890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_4
RNA_pol_Rpb1_3
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
ADB95313
UniProt:
D3EPB3
LinkDB
All DBs
Position
665667..669578
Genome browser
AA seq
1303 aa
AA seq
DB search
MTFYNQIVDKRRLKKLIALAFRNYGSAHSSQVADDLKNLGFRYATKAGVSISIDDLTVPP
AKRGMLQSAEQEISRTEARYARGEITEVERFQKVIDTWNSTSEELKDEVVRNFRKTDPLN
SVYMMAFSGARGNMSQVRQLVGMRGLMADPQGQIIDQPIKTNFREGLTVTEYVISSYGAR
KGLVDTALRTADSGYLTRRLVDVSQDVIVREIDCGTRRGLMVKAMKDGERVKIALGDRLL
GRVLAEDVIVGNDILAKRNQAIDAELAAKIGASVEYVIVRSPLTCEAARSVCQSCYGWSL
ATGRFVDLGEAVGIIAAQSIGEPGTQLTMRTFHTGGVFTGEVAEQIKSPSEGIIRWNKGL
SARKVRTRHGEDAFQVEVGGELNWCSSKNDDKSSYSITPGSVLFVADGDSVQKDKMLAEV
TSAKTTCATERATKDVSTDLAGEVFFASLVSEEKTDRQGNTTHIAQRGGLVWILSGEVYN
FPPGAEPTVSNGDQVVEEDVLAETKLVSMNGGIVRYLSESREIDIITASVSLDKAEIRRE
SSGGHEQYIIYTAENQRFLLKATPETKVQNHAVIAELIDNRCETSTGGILRYGGIEVAKG
SRKTGYEILGGGTLLWVPEETHEVNKDISLLIVEDGQYVEAGTEVVKDIFCQSSGVVEVV
QKNDILREIIIKPGEFHLDVDPNEVVLKNEDLVPPGTEVLPGVVSTDLCQVEWIESTEGQ
GLLLRPVEEYNINHKPKVPSQNSINGKDLERHIELRTVQKLFYKDGERVKSVDGVHLLNT
QLVLEIETGNDQLSSTLVADIELKDDDKKDCQRLQLVILESLTLRRDLDTDPYGGIIKTS
VLVSNGDQISPGDIVAKTQIRCKENGRIRGIKDGLEAVRRLLVVRNEDIQVFTLNEEPKV
KENDLVVAGTELASGVITAESGLISSINKISASNYKVTLRLARPYRVSAGAILHVDDGDL
VQRGDNLVLLVYERAKTGDIIQGLPRIEELLEARKPKEACILARKPGVCQIEYSDNEILS
MKVVEEDGAETDYPILLNQNVIVSDNQKVDIGEHLTDGPANPHELLEVFFNHYVDKKGVY
EAALIGLQEAQKFLVDQVQVVYQSQGIDISDKHIEVIVRQMTAKVRVDDGGDTTMLPGEL
VELRQIEQVNEAMSITGGAPAMYTPVLLGITKASLNTDSFISAASFQETTRVLTEAAIEG
KSDWLRGLKENVIIGRLIPAGTGFNVHEEMLTGAVDASDDNSDNQHEKESKQNNKYDREH
SNRLLGSTLDKVDENMILDDNIARAYTKAETPWNIYGKEKDDE
NT seq
3912 nt
NT seq
+upstream
nt +downstream
nt
atgacattctataatcaaattgttgacaaacgtcgcttaaaaaaactaatcgctttagct
tttcgtaactatggttcagctcacagttctcaagtagcggatgatttgaaaaacttagga
tttcgctatgcaaccaaagctggagtatctattagtattgatgacttaacagttccccct
gccaagcggggaatgcttcagagtgctgaacaagaaattagtaggacagaagctagatat
gctcgtggagaaataactgaagtagaacgttttcaaaaagttattgatacttggaatagt
acatcagaagaacttaaagatgaggttgttcgtaattttagaaagacagaccctctaaat
tcagtatatatgatggctttttctggggcgcgaggcaacatgagtcaagtgcgacaatta
gttggaatgcgtggtttaatggctgatccgcaaggtcaaattatagatcagccaattaaa
actaattttcgtgaaggtttaacagtaacagagtatgtaatttcttcatatggggctcga
aaaggcctagtagatactgcccttaggacagctgattcagggtatttgactaggagactg
gtagatgtctctcaagatgtaattgttcgagaaatagattgtggaactcgtcgtggatta
atggttaaagccatgaaagacggtgagcgtgtaaaaatagcgctaggagatcgattacta
ggaagagttttagctgaagatgtaattgtaggaaatgatattctagctaaaaggaatcag
gcaattgatgcagagcttgctgccaaaattggtgccagcgtagaatatgtaattgtacgt
tcacctctaacatgtgaagcagcccgttcagtatgtcaatcttgctatggatggagcttg
gcaacaggtcgcttcgtagatcttggcgaagcagttggtataattgcagctcagtcaatt
ggtgagcctggaactcagttaaccatgagaacatttcatactggaggagtattcactggt
gaagttgctgaacaaattaaatctcctagcgaaggaatcataagatggaacaaaggatta
agtgctcgtaaagtacgtacacgtcatggagaagacgcttttcaagttgaagtaggtggg
gaattaaattggtgttccagcaaaaatgatgataaatctagttattccataactcctggc
tcagtcttgtttgttgctgatggtgatagtgttcagaaagataaaatgctagccgaggta
acgtccgctaaaacaacttgtgctacagaacgagcaacaaaagatgtatctaccgatcta
gctggagaagtattttttgcaagcctagtgtcagaagaaaaaactgaccgccaagggaat
acgactcatattgcccaaagagggggattagtatggatattatcaggagaagtatataac
tttcctcctggggcagaaccaacagtgtcaaatggggatcaggtagtagaagaagatgta
ctagcagaaactaaattagtatcgatgaacggagggatagtaaggtatctttctgaaagc
cgtgaaatagatattattactgcctctgtatctttagataaggctgaaatacgtagagaa
agcagtggtgggcatgagcaatatataatctatacagctgaaaatcagagatttttatta
aaagcaactcctgaaacaaaggtacaaaatcatgcggttattgcagaactaattgataac
cgttgtgaaacttctacaggtggtattttacgttatggcggcatcgaagtcgctaaagga
agtcggaaaactggttatgaaatattaggaggaggaactctactatgggttcccgaagaa
actcatgaagttaataaagatatttctctattaatagttgaagatggacaatatgttgaa
gcaggtactgaagtggtaaaagatattttttgccagtcttcaggtgttgttgaagttgtt
caaaaaaatgacattttacgagaaattattattaagcctggagagtttcatttagatgtt
gatccaaatgaggtcgtattaaagaatgaagatcttgttcctccaggaactgaggtattg
cctggcgttgttagtactgatttatgccaagtagagtggattgaaagtactgaaggacaa
ggtttattgttacgccctgtcgaagagtataatattaatcacaaaccaaaagttccatct
caaaattcaattaatggaaaagatttagaaagacatattgaattaagaactgtacaaaaa
ttattttataaagatggagaaagagtaaaatcggttgatggagttcaccttttaaatact
cagttagtactggaaattgaaactggtaatgatcaactatcctctactttggtagcagat
attgaattaaaagatgatgataaaaaagattgtcagcgcttacaactagttattttagag
tcgttgacactacgtcgtgatcttgatacagatccttacggtggaataattaaaactagt
gtcttagtatcgaatggggatcaaatatctccaggtgacatagtagcaaaaacccaaatt
cgatgcaaagaaaatgggcgaattcgaggaataaaagatggccttgaagcagtacgtcgt
ctcttagtagtacgcaatgaagatatccaagtttttacattaaatgaagaaccaaaagtt
aaggaaaatgacttggttgtagcagggacagaacttgcttctggagtaatcacagctgaa
tcaggactaatatcttctataaataaaatcagtgcatcaaattataaagtaactttgcgg
ctagctcgtccttatagagtttctgctggagctattctacatgttgatgatggagattta
gttcaacgtggggataatttggtcttactggtttatgaaagagcaaaaacaggagatatt
atacaaggtttacctagaattgaagagttacttgaggctcggaaacctaaagaagcttgt
atattagctcgaaaaccaggagtttgccaaattgaatatagcgacaatgaaattttatca
atgaaagttgttgaggaagatggagcagaaactgactatcctattcttcttaatcaaaac
gttattgtttcagacaaccaaaaagttgatattggtgaacatttaactgatggtccagcc
aatccgcatgaattattagaagtattttttaatcattatgttgataagaaaggagtttat
gaagctgctttaattggtttacaagaagctcagaaattcttggttgatcaggtacaagtt
gtttatcaatctcaaggaattgatatttctgataaacatattgaagttattgttcgtcag
atgactgcaaaggttagggttgatgatggaggggatacaacaatgttacctggtgaatta
gtagaattaaggcaaatagaacaagtaaacgaggccatgtctattacaggtggtgctcca
gctatgtatactcctgttttgttgggaattaccaaagcttctttaaatacagacagcttt
ataagcgcagcatcatttcaagaaactactcgtgtgttaactgaagcagctatcgaagga
aaatctgattggctgagaggtttaaaagaaaatgtaattattggtcgtttaattcctgca
ggtactggttttaatgttcacgaagaaatgcttacaggagctgtagacgccagcgatgac
aattctgacaatcaacatgagaaagaaagtaagcaaaataataaatatgatagggagcac
tctaatcgattactaggatctactttagataaggtagatgagaatatgattttagatgat
aatattgctcgtgcttacactaaagcagaaactccttggaatatttatggtaaagaaaaa
gatgatgagtaa
DBGET
integrated database retrieval system
