Candidatus Atelocyanobacterium thalassa: UCYN_06480
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Entry
UCYN_06480 CDS
T01159
Name
(GenBank) DNA/RNA helicase, superfamily II
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cyu
Candidatus Atelocyanobacterium thalassa
Pathway
cyu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cyu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
UCYN_06480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cyu03019
]
UCYN_06480
03009 Ribosome biogenesis [BR:
cyu03009
]
UCYN_06480
Enzymes [BR:
cyu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
UCYN_06480
Messenger RNA biogenesis [BR:
cyu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
UCYN_06480
Ribosome biogenesis [BR:
cyu03009
]
Prokaryotic type
rRNA helicases
UCYN_06480
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
ADB95347
UniProt:
D3EPE7
LinkDB
All DBs
Position
728062..729495
Genome browser
AA seq
477 aa
AA seq
DB search
MTISFENLGLSETRVNKLKELGFENPTEIQEKAIPLMLEGHDVLGQSQTGTGKTAAYSLP
ILEKVDIQDPSVQVLILTPTRELAQQVAEALKDFTVRRRLYILTVYGGQSIDRQIRSLER
GVQIVVGTPGRVIDLIERKKLILDSLRWAVLDEADEMLSMGFIDDVKTILKKTPESRSTA
CFSATMPREIRELVNQFLKSPVTISVERTQAAPTRIEQNIYMVPRGWSKRKALQPVLEIE
DPESAIIFVRTKQTASDLTTRLQEIGHCVDEYHGNLSQSQRERLVHRFRDGRIKLVVATD
IAARGLDVEGLSHVINYDLPDNSETYIHRIGRTGRAGKTGKAISIVESADRRMIRQIERK
LRQKIDICKIPNRSEVEAKRLGKLQNLIKESLIGERMASFLPLVSELSTEYDSQAIAAAA
LQMIYDQDCPDWMKTDWEVPEAATPKPVIGRKSNKYNSKNSKHNRNTGKVIRKTVSH
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgactatttctttcgagaacttaggactatccgaaactcgcgtaaataaattaaaagag
ctcggatttgaaaatcctacagaaattcaggaaaaagcaattcctttaatgttagaggga
catgatgtattaggacaatcacaaacaggaacaggtaaaactgcagcctattctcttccc
atacttgaaaaagttgatatacaagatcctagtgttcaagtcttaattttaacgcctact
cgtgaacttgctcaacaagttgctgaagctttgaaagatttcacagtcagaaggcgcctc
tatatactaactgtctatggtggtcaatctatagacagacaaattcgaagcttagaaaga
ggagtacaaattgtagtaggaactccaggaagggttattgatcttatagaacggaagaaa
ttaattttagattctttacgttgggctgttctcgatgaagctgatgaaatgcttagtatg
ggttttattgatgatgtaaaaaccatactcaaaaaaacgcctgaaagtcgtagcactgct
tgcttttctgcaacaatgccaagagagataagagaacttgtcaatcagtttctaaaatct
ccagtaactatatctgttgaaagaactcaagctgctcctactcgaatagagcaaaacata
tacatggttcccagagggtggtcgaagcgtaaagcattgcaacctgtcttagagatagaa
gatccggaatcagccattatttttgtacgtactaagcaaacagcttcagatttaactaca
agactacaagaaattggccattgtgtagatgaatatcatggtaacctcagtcaatcacaa
agagaaaggttggtgcatcgttttagagacggcagaataaaactggtcgtagctacagat
attgctgcaagaggtttggatgtagaaggtttaagtcatgtaatcaactatgacttacca
gataatagcgaaacttatatccatcgtattggtcgtactggaagagctggtaaaactgga
aaagcaatttctattgtagaatctgctgatcgtagaatgattagacagattgagcgaaaa
cttcgtcaaaaaatagatatctgcaaaatacctaatcgctcagaagtcgaagcaaagcgg
ctagggaaattacagaatttaattaaagagtcattgataggagaaagaatggcttctttt
ttacctttagtaagcgaattaagtacggaatacgactcccaagcaattgctgctgcagcc
cttcagatgatttatgatcaagactgtcctgattggatgaaaactgactgggaagttcct
gaagcggctacgccaaaaccagttattggtcgtaagtctaataaatataactctaaaaat
agtaagcataatcgtaatactggtaaagttatccgtaaaacagtaagccattaa
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