Candidatus Atelocyanobacterium thalassa: UCYN_07880
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Entry
UCYN_07880 CDS
T01159
Name
(GenBank) exoribonuclease R
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
cyu
Candidatus Atelocyanobacterium thalassa
Brite
KEGG Orthology (KO) [BR:
cyu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cyu03016
]
UCYN_07880
Enzymes [BR:
cyu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
UCYN_07880
Transfer RNA biogenesis [BR:
cyu03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
UCYN_07880
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNB
CSD_RNase_II
HTH_RNase_II
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
ADB95481
UniProt:
D3EPT1
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Position
895721..897736
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AA seq
671 aa
AA seq
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MEKGKLIEFRINGERRLAVVDRPEGKKDWIVIDSEGSSYKLRQQKIEYEVIGGPYIASQI
LEFIEDANSYLDPSSLEVAWELLVEEKRTFTSEEMANFLFSVHSSEACYAAYCLLSDDKI
YFKKKGEVYEARSPGQVEEIKHQIEIENQRQRDKEVFFNNIHRRIAGEEIKWTEKDCSKL
ELLEKFVLQPDQNHRNAQDLLKELGQIISPNAAFDFLVSIGWWSPNENLFLKRSSYPINF
PKKVLDVASSSLENLPLNFNNERIDLTHLKVYTIDDESTEEIDDGLSVEVLENNIIKLWI
HIADPTYLISPGDELDLEARKRSTTLYLPTGTISMFPTELATGPMSLRQGQLCPSLSFGV
ILDENGAVLDYSINTSFIKPTYRLTYNDVNEILQLGITAEPELAILAKASKQRYCWRKSQ
GSITIKMPEASIKVKSEDEIIIDLLETSVSRQLVAEMMILAGEVAGDYCKKNNIPVPFRG
QPQPELPSEEELLLLPAGPVRSCALRRCMPKGEMATIPYRHSSLGLDYYTQVTSPIRRYT
DLLTHFQIKAHLSNQSLPFTLDMMQNILYSVTLSAQEASFVERQTNRYWGLEFLRRNTDQ
VWQGLVLRWLREDEGLGIILLEELGLELPHYFERSVQLGDHINVQVSRSDPYRDEIRFRE
VFKDEVEMQKI
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
gtggaaaaaggtaagctaattgagtttaggatcaacggagaacgtcgcttagctgtcgtt
gatcgtccagaaggaaaaaaagattggattgtaattgatagtgaaggaagttcatacaaa
ttaaggcaacaaaaaatagaatacgaagtgataggtggaccttatattgctagtcaaatt
cttgaatttattgaagatgctaactcttatctagatccatccagcctagaagtagcgtgg
gagttactagtagaggagaaaagaacttttacatcagaagaaatggcaaattttcttttt
tctgtacattcttctgaggcttgctatgccgcttattgcttactttctgacgataagatt
tattttaaaaagaaaggggaggtctatgaagctcgctctcctggacaagttgaagaaatc
aaacaccaaattgagatcgagaatcaacgtcagcgagataaagaggtcttttttaataac
atccatcgcagaatagctggggaagaaataaaatggactgaaaaagattgtagtaagcta
gaactattagaaaaatttgttctacagcctgatcaaaatcatcgaaatgcgcaagatctt
cttaaggagttaggacaaattattagtccaaatgctgcatttgattttttagtaagtatt
gggtggtggagtccaaatgaaaatttattcttaaagcgtagctcttatcctattaatttc
cctaaaaaggtactagacgtggcttcttcttctctagaaaatctacccttaaattttaac
aatgaacgtatagatttgacccatttgaaagtctatactatagatgacgaaagtactgaa
gaaattgatgatggactaagtgtggaagtcttagaaaataatattatcaagttatggata
catatagctgatcctacttacttaatcagtccaggagacgaactcgatttagaagcgaga
aaacgaagtacaactttatatttgccaacagggacaatttctatgtttccgacagaatta
gcaactggtcctatgagtttaagacaaggtcaattatgtccttcattaagttttggggtc
attctggatgaaaatggtgctgttcttgactactctattaatactagctttattaagccc
acttatcgtttaacctataatgacgttaatgaaatattgcaattaggtataactgctgaa
ccagaattagccattttagctaaagcatcaaaacaaagatattgttggagaaaatctcaa
ggatcaattactattaaaatgccagaggcatctattaaagttaagtctgaagatgaaatt
ataattgatttattagaaacatctgtttctcggcagctagtggcagaaatgatgattctt
gctggtgaagtagctggagattattgtaaaaaaaataatattcctgtcccttttagagga
cagccacagccggagttaccttcagaagaggaactgttactattgcctgctgggccagtt
agatcatgcgcattacgccgttgtatgcctaaaggagagatggcaactatcccatatcgt
cattcaagcttagggttagattattatactcaagtaacttctcctatacgacgctataca
gatttgttaacccatttccagataaaagctcatcttagcaatcaatcattaccatttaca
ctagatatgatgcaaaacatactatatagtgttactctttctgcacaagaagcatcattt
gttgaaaggcaaactaacagatattggggattagaatttctacgccgtaatactgatcag
gtatggcagggattagtactacgctggctaagagaggacgaaggcttaggaataattctc
ttagaagaattaggattagaattacctcattattttgagcgatcagttcagttaggtgac
catattaatgtgcaagtaagtcgttctgatccatatcgagatgaaatccgtttccgcgaa
gtattcaaagatgaagttgaaatgcaaaaaatttaa
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