Candidatus Atelocyanobacterium thalassa: UCYN_08160
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Entry
UCYN_08160 CDS
T01159
Name
(GenBank) single-stranded DNA-specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
cyu
Candidatus Atelocyanobacterium thalassa
Pathway
cyu03410
Base excision repair
cyu03430
Mismatch repair
cyu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cyu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
UCYN_08160
03430 Mismatch repair
UCYN_08160
03440 Homologous recombination
UCYN_08160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cyu03400
]
UCYN_08160
DNA repair and recombination proteins [BR:
cyu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
UCYN_08160
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
UCYN_08160
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
UCYN_08160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
Motif
Other DBs
NCBI-ProteinID:
ADB95507
UniProt:
D3EPV7
LinkDB
All DBs
Position
929811..932153
Genome browser
AA seq
780 aa
AA seq
DB search
MDTGQITWQSPSLVDLPPSFTNILSSFNISPQENFISQILWNRNIRTVDQLKIFLDCDSY
ESLSIFEGWSEVIPSVYRLKAAVQNKEKVIICGKEGLNSIISTSLLWEGLGNFLIPYTQL
NYYIPSYSTRCHGFNTASIKQFAIEEVNLIITCGIKDFSLQDLSLAKSFGIDIIAIGRNI
NPVNLKDLIYTIDSYSLSVDHPFFDLSETSLAYKLIESLHTEIPKTPSDNLDNLLDLVAI
NSISTLLKLNIELRYLTKKGIQNLQKQLKNPSRPGIAYLLYLCKLSGNRPTDICFGIGSR
INSVCCVNKSSSFLIELLTNKDKDYSEKLALEAELANIRCNNLQQYIIRNIRQTLKAIDL
SITQVIVLENPEWESEILKLIVQEVSCEYNKPTILLTTVECKENEQQNLNFSKGYAYSSN
NISSYELISSQHDLLYSFYGEEYSDLVDLSLSNENIPLFRERANQYLRQKYVEIDTSKSI
VETDLTVTVSQLGQSLFRELKILEPYGIGNLVPKLLIKNCYLKISKNNNGKTFKNHNLKY
VKTEFTLYDSSTKKGFPGVWWGHSKGELQNKEDIKYDVIVELGYSNLQPGNYEVRLIEIQ
EISHHLDSKKTRINLLDYRNDKITFNNINNGSFELFKFCPVDWSELLNIYEKSCKNFQDL
ALSYSFNVDSSSIDTIQKAIDIANFLSSNNQKITRKKLRKVLSLSDFSLDLMLDFLGKFG
FLINKDNKKLSFRTIVSTKSQHQTFLQKLNEVIEEENFKKRYFSQISLEILEQVLTDGNL
NT seq
2343 nt
NT seq
+upstream
nt +downstream
nt
atggatactggtcaaattacatggcaatctccatctcttgtagatttacctccctcattt
actaatatactcagctctttcaacatttctcctcaagaaaatttcatatctcaaattcta
tggaataggaatattagaactgttgatcaacttaagatttttttggattgtgattcttat
gaatctctaagtatatttgaaggttggagtgaggtgataccttctgtttatagattaaaa
gcagcagttcaaaataaagagaaggttattatctgcgggaaagaaggtcttaacagcatc
ataagtacaagtttattgtgggaagggctgggaaattttttgataccttacactcagctt
aattattatattcctagctatagcactagatgccatggttttaatactgcatcgataaaa
caattcgctattgaagaagtaaatttaattattacttgtggcataaaagattttagtctg
caagatcttagtcttgccaaatcttttggtattgatattattgcaataggcagaaacatt
aaccccgttaatttaaaggatcttatatatactattgattcttattctttatctgtagat
catcctttctttgatctttcagaaacttcattagcatataaattaattgaatctcttcac
accgaaattcctaagacaccaagcgataatttagataatttactagacttagtagccatt
aattcaatttctactttattgaaattaaatatagagttgagatatttaactaaaaaaggt
attcaaaatttacaaaagcaactaaaaaatcctagtaggcctggaatagcttatttactc
tatctgtgtaaactatctggaaaccgcccaactgatatttgttttgggattggttctagg
attaattctgtttgttgtgtcaataaaagttctagttttctgatagagttactgactaac
aaagataaagattattctgaaaaacttgctcttgaagctgaattagctaacattcgatgt
aataacctacagcaatatattattagaaatattaggcaaactttaaaagctattgattta
tctataactcaggttattgttctagaaaatcctgaatgggagagtgaaatattgaaatta
attgttcaagaagtttcatgtgaatataataagccaacaattttattgacaaccgtggaa
tgtaaagaaaatgaacaacaaaatttaaatttttccaaaggatatgcatattcttctaat
aatatcagttcctatgaattgatatcttctcaacatgatctactgtattcattttatgga
gaagaatactcagatttagttgatttaagtttaagtaatgaaaatattcctttatttaga
gaaagagccaatcaatacttacgacaaaaatatgttgaaattgatacctcaaagtctata
gttgagactgatttgacagttacagtttctcaactcggacaatctttatttcgagaatta
aaaattttagagccttacggtataggtaacctggttcctaaattacttattaaaaattgt
tatcttaaaatttctaaaaataataacggcaaaacttttaaaaatcataatttaaaatat
gtaaaaactgagtttactctttatgactcttctactaaaaaaggatttcctggagtttgg
tgggggcactctaagggggaactacagaataaagaggatataaaatatgatgttatcgtc
gagctaggttatagcaacttacaacctggaaattatgaagtgcgcttaatcgaaattcaa
gaaatttcacatcatcttgactccaaaaagacaagaatcaatttattagattatagaaat
gataaaattacttttaacaatataaacaatggatcttttgagctttttaagttctgtcct
gttgattggtcagaattattaaatatatatgaaaaaagctgtaagaattttcaagatcta
gctttatcgtactcattcaacgttgattcaagttctatcgatacaattcaaaaagctatt
gacattgctaattttttatcttctaataatcaaaaaattacaaggaaaaaattgcgaaaa
gtcttatctctaagtgattttagcttagatttaatgttagattttttagggaaatttgga
tttttaattaataaagataataaaaaattatcttttcgtactatagtaagtacaaagtct
caacaccaaacttttttgcaaaagcttaatgaagtcattgaagaagaaaattttaaaaaa
agatatttttctcaaatttctctagaaatactagaacaagttttaactgacggtaatctt
taa
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