Cycloclasticus sp. PY97N: CPC19_00560
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Entry
CPC19_00560 CDS
T05126
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
cyy
Cycloclasticus sp. PY97N
Pathway
cyy03420
Nucleotide excision repair
cyy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cyy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CPC19_00560
03430 Mismatch repair
CPC19_00560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cyy03400
]
CPC19_00560
Enzymes [BR:
cyy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CPC19_00560
DNA repair and recombination proteins [BR:
cyy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CPC19_00560
MMR (mismatch excision repair)
Other MMR factors
CPC19_00560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_30
Viral_helicase1
AAA_11
CarD_TRCF_RID
Motif
Other DBs
NCBI-ProteinID:
ATI02001
LinkDB
All DBs
Position
complement(109922..112087)
Genome browser
AA seq
721 aa
AA seq
DB search
MDITHILDGLNDAQRDAVSGPEKAALILAGAGSGKTRVLVHRVAWLMQVEGVSPYSILAV
TFTNKAAGEMRERVQSMLKTPVGGMWIGTFHGIAHRLLRMHAQELGLPDAFQVLDSDDQF
RMIKRLLKSMNVDDSRWPPRQVQWFINAQKDEGKRAKHIAPSSDHFEQKMLEIYAEYEQV
CQRSGLVDFAELLLRAHELLRDNDAVRAHYQQRFKHVLVDEFQDTNTIQYAWLRLLTEES
ENLYVVGDDDQSIYGWRGAKIENIHRFQKDYAEHKVVRLEQNYRSTSTILKAANAIIVNN
DGRMGKELWTDGEEGELISLYSGYNDQDEARFVVDRIKDWVTNGHSREEAAILYRSNAQS
RLFEEYLMAAGIPYRVYGGYRFFERLEIKNALAYMQLATHHDNDAAFERIVNTPTRGLGT
RTLDIIREQARGKSISLWQAANELCEEAALTGRALNALTGFLALIRQLVVDMASMSLHEK
VEQVISRSGLIEHHKKEKGEKGEARVENLEELSNAARQFAYEADEAEELSELDSFLAHAA
LEAGEAQGDKFEDCVQLMTLHSAKGLEFPLVFMVGMEEGLFPSQRSVDDAAKLEEERRLA
YVGITRAKEKLYLTSAESRRLHGQESYPMPSRFIREIPAELMQEVRLGTRVTRPVVSNQQ
ASFSDESAVGFKMGEHVVHAKFGEGVVLNIEGSGAQARVQVNFSSAGSKWLMLAYAKLDK
V
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atggatattacacatatattagatgggcttaacgatgctcagcgagatgcagtgagtggc
ccagaaaaggccgcacttattttagcaggggcaggcagtggtaaaacgcgtgtgctggtg
catcgagttgcctggctgatgcaggttgaaggtgtttcgccgtatagtattttggcggta
acgtttactaataaagcggcaggtgaaatgcgtgagcgtgtgcaatcgatgctaaaaaca
ccggttggtggcatgtggattggcacctttcatgggatcgcccatcgtttattaagaatg
catgctcaagaactgggcttaccagatgcgtttcaggtgctagattcagatgatcaattt
cggatgattaagcgtttgcttaaatcaatgaatgtggatgattcacgctggccacctcgc
caagtccaatggtttatcaatgcacaaaaagacgaaggtaaacgagcgaaacatattgcg
ccgtcgagtgatcattttgagcaaaaaatgttagagatttatgcagaatatgaacaagtt
tgtcagcgctctgggctggtcgattttgctgaattattacttagagcacatgagttatta
cgtgataacgatgcggtaagagcacattatcagcagcgttttaaacatgtgttagtcgat
gagtttcaagataccaataccattcaatatgcttggttacggctactcacagaagaatct
gaaaacttatatgtagtgggtgatgacgatcaatctatttatggttggcgtggtgcaaag
attgagaatattcatcgttttcaaaaagattatgctgaacataaggtggtgcgtttagag
caaaattaccgttccaccagtaccatcctaaaagcagccaatgccattattgttaataac
gatgggcggatgggtaaagagttatggaccgatggtgaggaaggcgagttaatctctttg
tattcgggctataacgatcaggatgaagcgcgctttgttgttgatagaattaaagactgg
gtgacgaatgggcacagtcgtgaagaagccgctattttatatcgctccaatgctcagtcg
cgcttatttgaagagtatctaatggctgccggtattccttaccgtgtgtatggtggttat
cgtttcttcgaacggttagaaattaaaaatgcattagcctatatgcaactggcgactcat
cacgataatgatgcggcatttgagcgcattgttaatacgccaacacgcgggctaggtacg
cgtacgctagatattattcgtgagcaagctcgtgggaaaagcataagcctttggcaggca
gcaaatgagttatgtgaggaagcggcgttaactggtcgagcattaaatgcattgacgggc
tttttagccttgattcgtcaactggttgttgatatggcgtcgatgagcttacatgaaaaa
gttgaacaggtaattagccgttctggtttgattgagcatcataaaaaagaaaaaggcgag
aagggcgaagcacgagtagaaaacttagaagagcttagcaatgcagcgcgtcaatttgcc
tatgaggccgatgaagctgaagagttgagtgagttagactcatttttagcacatgctgct
ttagaggctggtgaagctcaaggtgataaatttgaagactgcgttcaattgatgaccctg
cattcggcaaaaggcttggagtttccactggtctttatggttggtatggaagaaggcttg
tttcctagtcagcgctcggttgatgatgcagcgaaactagaagaagagcgacggctagcc
tatgttggtattacacgagcaaaggagaagttgtatttgacctctgcagaatcgcgtcgt
ttacatgggcaagaaagctatccgatgccgtctcgtttcattagggaaattcctgctgag
ttaatgcaggaggttcgtttaggcactcgtgtaacacgccccgtagtaagcaatcaacaa
gctagttttagtgatgaatcagccgttggttttaaaatgggcgagcatgtcgtgcatgca
aaattcggcgaaggtgtggtgttgaatattgaaggcagtggtgcgcaagcgcgagtgcag
gttaatttttcttcagcgggtagtaaatggctaatgcttgcctatgcgaaattagataaa
gtttag
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