Cycloclasticus sp. PY97N: CPC19_10040
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Entry
CPC19_10040 CDS
T05126
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
cyy
Cycloclasticus sp. PY97N
Pathway
cyy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cyy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CPC19_10040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cyy03019
]
CPC19_10040
Enzymes [BR:
cyy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CPC19_10040
Messenger RNA biogenesis [BR:
cyy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CPC19_10040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HI1480
AAA_19
AAA_22
UTP25_NTPase-like
P-loop_SecA
Cas3-like_C_2
GcvP2_C
Motif
Other DBs
NCBI-ProteinID:
ATI03789
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All DBs
Position
2081071..2082399
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AA seq
442 aa
AA seq
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MSFDSLGLRAELITAVSKKGYTEPTSIQAQSIPLILEGRDLMGGAQTGTGKTASFTLPVL
QRLMESGDAKPKAGKVRALVLTPTRELAAQVAESVRDYGQHLPLSSFVIFGGVNINPQKQ
KLRKGVDILVATPGRLLDHVSQNTVDLSSVEILVLDEADRMLDMGFIRDIRKVLALLPQQ
KQTLLFSATFSNEIKKLTSSLLHNPALVEVAKENSASELISQVVHPVDKKRKRELLSFLI
GSNDWKQVLVFTRTKHGANKLSEQLNKDGITAAAIHGNKSQGARTKALANFKSNDIRVLV
ATDIAARGLDIDQLPHVVNFELPNVPEDYVHRIGRTGRAGSEGEAMSLVCVDELKLLKGI
ERLIKTDIKKVTFEGYEPDLSIKPEPIQNGRNNQRPRKSTPKNHSPAKPKTNTGAKPNGS
TRAKKRNTQNKPTNRPDNFGNR
NT seq
1329 nt
NT seq
+upstream
nt +downstream
nt
atgtcgttcgactcactcggcctcagagctgaattaatcaccgctgtatctaaaaaaggc
tacaccgaacccacctcaatccaagcccaatccattccactcatcctagaaggacgagac
ctaatgggcggcgcacaaactggcaccggaaaaacagccagtttcacgttacctgtttta
caacgccttatggaatctggcgacgcgaaaccaaaggcgggcaaagttcgcgccttagta
ttaacaccaacgcgcgaactagcggcacaagttgctgagagcgtcagagattatggtcaa
catttacccttatcatcgtttgttatatttggtggtgtaaacattaatccacaaaagcaa
aaattgcgtaagggtgttgatattttagtcgcaacgccaggccgtcttctcgatcatgtc
agccaaaatactgttgacctatcatccgtcgaaatcctcgtactcgatgaggccgatcgt
atgcttgatatgggctttattcgagacattagaaaggttttagctttactacctcagcaa
aaacaaacactactgttttcagccaccttctcaaacgaaattaagaaactaacgagcagc
ctgttacataaccctgcgttagtagaagtcgccaaagagaattctgcatcggagctgatc
tcccaagtcgttcaccctgttgataaaaaacgcaaacgtgaattattatcttttcttatt
ggctcaaatgactggaaacaagtcctagtgtttacacgcactaaacatggcgccaacaaa
ttatccgagcaactcaacaaagatggtattactgcagccgctattcatggtaataaaagc
caaggggctcgcactaaagcattagcaaactttaaatccaacgatattcgtgtattggtt
gccacagacatcgccgctcgtggcctagacattgaccagcttccccatgtagttaatttt
gaactgcctaatgtgcctgaagattatgtacaccgcatcggtcgtactggccgagcaggc
agcgaaggtgaagccatgtctctagtttgtgttgatgaattaaaactactaaaaggtatt
gagcgcctgattaaaaccgatatcaaaaaagttacttttgaaggttatgaacctgatcta
agcatcaaaccagaaccgattcaaaatggccgtaataatcaacgccctagaaaatcaaca
cccaaaaaccattcacctgccaaacctaaaacaaacaccggtgctaaaccgaatggctcc
actcgtgcaaaaaagcgcaatactcaaaataaacctaccaaccgacctgataattttgga
aatcggtaa
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