Cycloclasticus zancles: CYCME_0282
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Entry
CYCME_0282 CDS
T02780
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cza
Cycloclasticus zancles
Pathway
cza03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cza00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CYCME_0282
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cza03019
]
CYCME_0282
03400 DNA repair and recombination proteins [BR:
cza03400
]
CYCME_0282
Enzymes [BR:
cza01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CYCME_0282
Messenger RNA biogenesis [BR:
cza03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CYCME_0282
DNA repair and recombination proteins [BR:
cza03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CYCME_0282
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HTH_40
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Sigma70_r4_2
Motif
Other DBs
NCBI-ProteinID:
AGS38624
UniProt:
S5T4V7
LinkDB
All DBs
Position
277789..279903
Genome browser
AA seq
704 aa
AA seq
DB search
MNRAQSILQSTFGYDAFREPQGEIIHELEQGRDAFVLMPTGGGKSLCYQIPALLRDGTAI
IVSPLIALMQDQVDALNQLGIKAAYLNSTLDVAEAREVEAQLLNGALDLLYVAPERLLNP
IMLSLLERCHIALFAIDEAHCVSQWGHDFRPEYQKLRVLHERFPQVPRIALTATADQRTR
DEIIAQLQLEGARVFINSFDRPNIHYAISEGNNPKLRLWRFIQENHAQDAGIVYCLSRKK
VEATAEWLTEQGRIALPYHAGLSQELRQKNQQRFLRDEGVIIVATIAFGMGIDKPDVRFV
AHLRLPKSIEAYYQETGRAGRDGEPANAWMAYGLQDVLTLRQFMQNSNADEAHKRVEHNK
LESMLGLCELIACRRQALLGYFDERLEQPCGACDNCTTPPEKWDGSEAAQKILSSIYRTG
QRFGVNYIIDVLMGKADERIRQNQHEQLSTFGIGKEFSTMEWRTIFRQLIALGFINVEAE
SHGSLTLTEKCRPVLRGEQKLALRKQTKEEKLTTEKKKKSPVRPQDEPLWDALRALRTQL
AEDSGVPPYVIFHDATLMEMIKKRPVEIGDMRYISGVGDQKIKRYGQVFLAEIAKYPLAE
LLNNRLSATVNETLMLYQEGLDIKAIATQRDMKENTVYGHLADAIEVGLLDVKEVLDLDD
SEYQEIIMTIESLEDESKGRIKPIYEALDEEYEYGIIKCVQASM
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atgaatcgcgcgcaatctattttacagtcaacgtttggttacgacgcttttcgtgagcca
caaggtgagattattcatgagttagagcaagggcgcgatgcctttgtgctgatgcccact
ggcggcggtaagtcgctgtgctaccaaattccagccttattgcgtgatggcactgcgatt
attgtatcgccattgattgcgctgatgcaggatcaggtggatgcgcttaatcaactgggt
attaaagcagcctatttaaactcaacactcgatgtcgctgaggcgcgagaagtggaggcg
caattattaaatggcgctttagatttattgtatgtagcgccagaaaggttgttgaaccct
attatgctgtcgttgttggagcgctgccatattgccttgtttgcgattgatgaggcgcat
tgtgtatcgcaatgggggcatgactttaggccagaatatcaaaagttacgtgtgctgcat
gagcgttttccacaagtgccgcgtattgcattaaccgccacagctgatcaacgtacgcgc
gatgaaattattgcgcaattacaacttgaaggggcgcgggtattcatcaatagttttgat
cggccgaatattcactatgctatttctgaaggtaataacccgaaattacggttgtggcgc
tttatacaggaaaatcatgcgcaagatgcaggcattgtgtattgcctatcacgcaagaaa
gtagaagcgactgccgaatggttaacagaacaagggcgtatcgcattgccttatcacgcg
ggcttatcgcaagagcttaggcaaaaaaaccaacagcgttttttacgcgatgaaggggtg
attattgtcgctacaatcgcctttggtatgggcatagataagccggatgtacgttttgta
gcgcacttacgtttaccaaaaagtattgaggcgtattatcaagaaaccggtcgtgcaggc
cgtgatggcgagcctgcaaatgcctggatggcgtatggcttgcaagatgtattgacgctg
cgacaatttatgcaaaactccaatgccgatgaggcgcataaacgtgttgagcataataaa
ttagaatctatgctggggctttgcgagctgattgcttgtcggcggcaagccttgctaggc
tactttgatgagcggttagaacagccatgtggtgcctgtgataattgcacaacaccgcct
gaaaaatgggatggttctgaagcggcgcaaaagattttatcgagcatttatcgtacaggg
caacgctttggcgttaattatattattgatgtcttaatgggtaaggccgatgagcgtatt
cggcaaaaccagcacgagcagttaagtacctttggcattggtaaagaattctcaacgatg
gaatggcgaactatttttaggcagttgatagcgcttggctttattaatgttgaagcagaa
agccatggctcgctaacactgacagaaaaatgccgaccagtgttacgcggtgaacaaaaa
ctggcgctaagaaagcaaacaaaagaagaaaagctgacaacagaaaaaaagaagaaaagc
cctgttcgcccacaagacgagccgttatgggacgctttacgagctttgagaacgcaacta
gcggaagacagtggtgtgccgccctatgtcatttttcatgatgcaaccttaatggaaatg
attaaaaagcgcccggttgagattggcgatatgcggtatatcagtggcgtgggtgatcaa
aaaataaagcgttatggccaggtttttttggcagaaattgcaaagtacccgttagcagaa
ttattgaataatcggcttagcgcaacggttaatgagacgctcatgttgtatcaagagggt
ttagatataaaggcgattgcaacacagcgcgatatgaaagaaaacacggtatatggacat
ttagccgatgcaattgaagtagggctactggatgtcaaagaggtactcgatttagacgac
agtgaatatcaagaaatcatcatgactatagagtctttggaagatgagtcaaaaggccgc
attaaacctatctatgaggccttggatgaagagtatgaatacggcattattaaatgcgtt
caagcctctatgtaa
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