Cycloclasticus zancles: CYCME_1247
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Entry
CYCME_1247 CDS
T02780
Symbol
rne
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
cza
Cycloclasticus zancles
Pathway
cza03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cza00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CYCME_1247 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cza03019
]
CYCME_1247 (rne)
03009 Ribosome biogenesis [BR:
cza03009
]
CYCME_1247 (rne)
Enzymes [BR:
cza01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CYCME_1247 (rne)
Messenger RNA biogenesis [BR:
cza03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CYCME_1247 (rne)
Ribosome biogenesis [BR:
cza03009
]
Prokaryotic type
rRNA processing factors
CYCME_1247 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
Extensin_1
S1
HDA2-3
Motif
Other DBs
NCBI-ProteinID:
AGS39576
UniProt:
S5T716
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All DBs
Position
complement(1252216..1254822)
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AA seq
868 aa
AA seq
DB search
MRHQEKKQMKRMLINATHTEELRVALVDGQKLYDLDIEVPAREQKKSNIYKGLITRVERS
LEAVFVDYGANRHGFLPFKEITGQAIGLDTQDIKDKNQIKEGLEIVVQVEKEERGNKGAA
LTTQISLAGSYLVLMPNNPGSGGISRRIDGDNRTALREVLDQLEIPENIGLIVRTAGVGK
SVEELQWDLNYLTHLWDAISLASKDRKAPYLIFQESNFVIRSIRDYLRADIDEVLIDSEA
SFNLAHDFMQQIMPQYLSRVKLYEDSVPLFTRYQIESQIETAYGREVPLPSGGSIVIDPT
EALTSIDINSARATKGADFETTALNINLEAADEIARQLRIRDMGGLFVIDFIDMGPTKNQ
RMVENRIKEAMKHDRARIQFSRISRFGLLEMSRQRIHSSLTESSLPVCPRCHGQGTIRSV
ESLSLSIIRILEEEAMKEHTARVVVHVPIDCATFVLNEKRSEVEQIEETHKVSLIIVPDK
HLETPHYEIERIRTKEAKQDTAASHERLQNSKTRDAKPYQREAVSQETAAVKNVMPATQR
PTAPSNVANDGFFKRLLSKIVPSSEKQPVKKEPAKANKTSNNQQGNQQRNANPNENKNRN
RNKNRNKNRNNKDQSKQNPNTSQAANVDGSNEKTNPKPAQTKQNDAEQPSRPRRRRRSNK
RSPNSDAPKSQNTNIAESKPLESKPLESKPVESKPVESKPVESKPVESKPVEAKPTETGN
TGVKNGTRHPRRRRRTTSNKPKPLDTANGSPETNQGAATSKPVDVESKPVESKPVESKPV
ESKPVESKPVESKPVESKPVEAKPVEAKPVESKPVESKPVEAKPVEAKPVEAKPVEAKPV
EAKPVEAKPVEAKPVEPKPVESLTKDQQ
NT seq
2607 nt
NT seq
+upstream
nt +downstream
nt
atgcggcatcaggaaaagaaacaaatgaaaagaatgttaatcaatgccactcacacagaa
gagttacgagtggcccttgtcgacggacaaaaactatatgaccttgatatagaggtacct
gcaagagaacagaaaaaatcaaatatatataaaggacttattacccgcgtagaacgtagc
ttagaagccgtttttgttgactatggtgctaaccgccatggtttccttccatttaaagaa
attaccggtcaagcgattggcttagacacccaagatataaaagacaaaaaccaaattaaa
gaaggtttggaaatagtcgtacaagttgaaaaagaagagcgtggcaataaaggcgcagcg
ctgacaacacaaattagcttagcaggtagctatttagtattaatgccaaacaacccgggt
tcgggcggtatttcacgccgtattgacggtgataatagaacagctttacgcgaagtactt
gatcaacttgaaattccagaaaatattggcctcatcgttcgtactgccggtgttggtaag
tcagtcgaagagctccaatgggacttaaactatcttacacatttgtgggatgccattagt
ctcgcttcaaaagaccgtaaagcgccctatttgatcttccaagaaagcaactttgttatc
cgttctattcgtgattacttacgtgctgatattgatgaagttctgattgatagtgaagca
tcatttaatttagcacatgattttatgcagcaaattatgccgcaatatttatcgcgcgtt
aaactttacgaagactccgttcctttgttcacgcgttaccaaatcgaaagccaaattgaa
accgcttacggacgtgaagtccctcttccatctggtgggtccattgttatagacccaact
gaagcgctcacctccatcgacatcaactcagctcgtgctacaaaaggtgctgactttgaa
acgaccgcactcaatatcaaccttgaagctgctgatgagattgcaagacaacttcgtatt
cgtgatatgggcggcctattcgtcatcgatttcattgatatggggcctactaaaaatcaa
cggatggtagaaaatcgcattaaagaagcgatgaagcatgacagagcacgtattcaattc
agcagaatttcacgctttggtttattggaaatgtctcgtcaacgaatccattcatcgtta
acagagtctagcttgcctgtttgcccacgctgtcatggtcagggtactattcgaagtgtt
gagtcgctctctttatccattattcgcattctggaagaagaagcgatgaaagagcataca
gcgcgggtagttgttcatgtccccattgattgcgcgacttttgttcttaacgaaaaacgt
tctgaagttgagcaaattgaagagactcataaagtatcgttgattatcgttcctgataaa
catcttgaaacacctcattacgaaatagaacgaattcgtacaaaagaagcaaaacaagat
acggctgccagtcatgagcgcctacaaaatagtaagactcgagacgctaaaccatatcaa
cgtgaagccgtcagccaagaaacggccgccgttaagaatgttatgcctgctacacaacgc
ccaacagcaccatcaaacgtagccaacgatggtttctttaagcgtttgttaagcaaaata
gtgccgtcatcagaaaaacaacctgttaaaaaagagccggctaaagcaaataaaacgagc
aataaccagcaaggcaaccaacaacgcaacgctaacccaaacgaaaataaaaatagaaac
cgtaataaaaacagaaataaaaatagaaataacaaagatcagagtaagcagaacccaaat
acatcacaggctgctaatgttgatggttcaaacgaaaaaacaaacccaaaaccagctcaa
accaaacaaaacgatgctgagcaaccatcacgacctagaagacgacgtagatccaataaa
cgttcacctaacagcgatgcacctaagtcacaaaacactaatattgccgaatctaagcct
ctagagtctaagcctctagagtctaagcctgtagagtctaagcctgtagagtctaagcct
gtagagtctaaacctgtagagtctaaacctgtagaagctaagcccactgaaactggtaac
acaggggttaaaaacggtactcgccaccctcgcagaagaaggcgtacaacaagcaacaaa
cctaagcctctcgacacggcaaatggctcaccagaaaccaatcaaggtgcagccacttca
aagccagtagatgtagagtctaagcctgtagagtctaagcctgtagagtctaagcctgta
gagtctaagcctgtagagtctaagcctgtagagtctaagcctgtagagtctaagcctgta
gaagctaagcctgtagaagctaagcctgtagagtctaagcctgtagagtctaagcctgta
gaagctaagcctgtagaagctaagcctgtagaagctaagcctgtagaagctaagcctgta
gaagctaagcctgtagaagctaagcctgtagaagctaagcctgtggagcctaaacctgtt
gagtcattaaccaaagatcaacagtaa
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