Cycloclasticus zancles: CYCME_1554
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Entry
CYCME_1554 CDS
T02780
Name
(GenBank) Single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
cza
Cycloclasticus zancles
Pathway
cza03410
Base excision repair
cza03430
Mismatch repair
cza03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cza00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CYCME_1554
03430 Mismatch repair
CYCME_1554
03440 Homologous recombination
CYCME_1554
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cza03400
]
CYCME_1554
DNA repair and recombination proteins [BR:
cza03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
CYCME_1554
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
CYCME_1554
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CYCME_1554
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Glyco_transf_4
Motif
Other DBs
NCBI-ProteinID:
AGS39879
UniProt:
S5T8D5
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All DBs
Position
complement(1551933..1553693)
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AA seq
586 aa
AA seq
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MAGETELASSSIVIKHRESTGHDSDALPDLHPVLRQVYLNRGVTHEQQLDRTLKNLPNYQ
RLSGIDKAVSLIKTAIKTDQKILIVADFDADGATSCAVAIRGLRMLGATNLDFVVPDRFK
FGYGLTPEIVDVALELKPDLLITVDNGISSVEGVAHAIKKGCQVIVTDHHLPPKTLPNAD
AIVNPQLQGDEFPSKSLAGVGVIFYVLLALRAALKIEGVFDKQPVPNLANLLDIVALGTV
ADVVPLDELNRKLVYQGLLRIQAKKCVPGIIALLNIAKREPERVVSSDLGFAIGPRLNAA
GRLDDMSLGIQCLLTDSEQEARDMAEQLDMLNIERRSIEEDMKQDAYKILASLKPSQHQH
DQWGVCLFDEYWHQGVIGILASRIKEKLNRPVIAFAKGDGEDVKGSARSIPGLHIRDTLD
DVASLHPGLLKKFGGHAMAAGMTIDENNLSLFIEAFNVAVKKRLNNELPDDVLLVDGEVP
DNDINLTFAETLRQAGPWGQNFPEPVFVGRFKVKQARILSQKHVKLSFETLSNNRVIDAI
YFNVDNPGSIIGLNEVVVAYQLDVNTYMGRSRVQLLVRHLEEVKQF
NT seq
1761 nt
NT seq
+upstream
nt +downstream
nt
atggcgggcgaaaccgaattagcaagctcatctattgttataaaacatcgtgagtcaact
ggccatgattcagacgctttgccagatttacatcctgttttacggcaagtgtacttaaat
cgtggggttacccatgagcaacaacttgaccgtacattaaagaacttaccgaattatcaa
cgcctttcaggtattgataaagctgtcagccttattaagacggcaattaaaacagatcaa
aaaatactcattgtggctgattttgatgcggatggtgccacttcgtgtgcggtagctatt
agaggtttacggatgttgggtgcaactaatttagactttgttgtacccgaccgctttaaa
tttggttatggcctaacgcctgaaattgttgatgttgcactagagttaaagccagattta
ttaatcacggtagataacggtatttctagtgtggaaggggttgcgcatgctatcaagaaa
ggctgccaagtcattgttaccgatcatcatttaccacctaaaacactaccaaatgcagat
gcaatcgttaatccacaactacagggtgatgagtttcctagtaaatccttagcgggtgtt
ggcgtcatcttttatgttttattggcactgagagccgccttaaaaattgaaggtgtgttt
gataagcaaccagtgcctaatcttgcaaacctactcgatattgtagcgcttggtacggtg
gcagatgtggtacccctagatgagcttaaccgtaaattggtctatcaaggcttgcttagg
atacaagcaaaaaaatgcgttccagggattattgccttacttaatattgctaagcgtgaa
ccagagcgtgttgtttctagtgatttaggttttgctattggtccacggttaaatgccgcc
gggcgacttgatgatatgtctctcggtattcaatgcttgctcaccgatagtgaacaagag
gcacgcgatatggctgagcaattggacatgttgaatatagagcgtcgttcaattgaagag
gatatgaaacaagatgcatacaagattttggcttcgttaaaaccaagtcagcatcaacat
gatcaatggggtgtttgtttgttcgatgaatactggcatcaaggtgtgataggtatactg
gcatcgcgaattaaagaaaaacttaatcgaccagtgattgctttcgcaaagggtgatggt
gaagatgtaaaaggctcagcacgttcgatccccggtttacacataagagatacgctagac
gatgtggctagtttacaccctgggttattaaaaaaattcggtggtcatgcaatggcggca
gggatgacgattgatgaaaataatttaagcctatttatcgaggcatttaatgtagccgtt
aaaaaacgtcttaataatgaattgcctgatgatgtgttattagtagacggagaggtgcct
gataacgatattaatttaacatttgctgaaacacttcgacaagctggaccttggggtcaa
aactttccggaaccggtttttgttggtcgttttaaggtaaagcaagcgcgaattttgtca
caaaaacacgtgaagttatcttttgagacgttaagtaacaacagagtgatagacgcgatt
tattttaatgtagataatccaggcagtattattggtttaaatgaggtggttgttgcttat
caattagatgttaacacctatatggggcgctcaagggtgcaattattagttaggcatcta
gaagaagtgaagcaattttaa
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