Cycloclasticus zancles: CYCME_2001
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Entry
CYCME_2001 CDS
T02780
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
cza
Cycloclasticus zancles
Pathway
cza03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cza00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CYCME_2001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cza03019
]
CYCME_2001
Enzymes [BR:
cza01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CYCME_2001
Messenger RNA biogenesis [BR:
cza03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CYCME_2001
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HI1480
AAA_19
AAA_22
UTP25_NTPase-like
P-loop_SecA
Cas3-like_C_2
GcvP2_C
Motif
Other DBs
NCBI-ProteinID:
AGS40315
UniProt:
S5TYR7
LinkDB
All DBs
Position
2033842..2035170
Genome browser
AA seq
442 aa
AA seq
DB search
MSFDSLGLRAELITAVSKKGYTEPTSIQAQSIPLILEGRDLMGGAQTGTGKTASFTLPVL
QRLMESGDAKPKAGKVRALVLTPTRELAAQVAESVRDYGQHLPLSSFVIFGGVNINPQKQ
KLRKGVDILVATPGRLLDHVSQNTVDLSSVEILVLDEADRMLDMGFIRDIRKVLALLPQQ
KQTLLFSATFSNEIKKLTSSLLHNPALVEVAKENSASELISQVVHPVDKKRKRELLSFLI
GSNDWKQVLVFTRTKHGANKLSEQLNKDGITAAAIHGNKSQGARTKALANFKSNDIRVLV
ATDIAARGLDIDQLPHVVNFELPNVPEDYVHRIGRTGRAGSEGEAMSLVCVDELKLLKGI
ERLIKTDIKKVTFEGYEPDLSIKPEPIQNGHNNQRPRKSTPKNHSPAKPKTNTGAKPNGS
TRAKKRNTQNKPTNRPDNFGNR
NT seq
1329 nt
NT seq
+upstream
nt +downstream
nt
atgtcgttcgactcactcggcctcagagctgaattaatcaccgctgtatctaaaaaaggc
tacaccgaacccacctcaatccaagcccaatccattccactcatcctagaaggacgagac
ctaatgggcggcgcacaaactggcaccggaaaaacagccagtttcacgttacctgtttta
caacgccttatggaatctggcgacgcgaaaccaaaggcgggcaaagttcgcgccttagta
ttaacaccaacgcgcgaactagcggcacaagttgctgagagcgtcagagattatggtcaa
catttacccttatcatcgtttgttatatttggtggcgtaaacattaatccacaaaagcaa
aaattgcgtaagggtgttgatattttagtcgcaacgccaggccgtcttctcgatcatgtc
agccaaaatactgttgacctatcatccgtcgaaatcctcgtactcgatgaggccgatcgt
atgcttgatatgggctttattcgagacattagaaaggttttagctttactacctcagcaa
aaacaaacactactgttttcagccaccttctcaaacgaaattaagaaactaacgagcagc
ctgttacataaccctgcgttagtagaagtcgccaaagagaattctgcatcggagctgatc
tcccaagtcgttcaccctgttgataaaaaacgcaaacgtgaattattatcttttcttatt
ggctcaaatgactggaaacaagtcctggtgtttacacgcactaaacatggcgccaacaaa
ttatccgagcaactcaataaagatggtattactgcagccgctattcatggtaataaaagc
caaggggctcgcactaaagcattagcaaactttaaatccaacgatattcgtgtattggtc
gccacagacatcgccgctcgtggcctagacattgaccagcttccccatgtggttaatttt
gaactgcctaatgtgcctgaagattatgtacaccgcatcggtcgtactggccgagcaggc
agcgaaggtgaagccatgtctctagtttgtgttgatgaattaaaactactaaaaggtatt
gagcgcctgattaaaaccgatatcaaaaaagttacttttgaaggttatgaacctgatcta
agcatcaaaccagaaccgattcaaaatggccataataatcaacgccctagaaaatcaaca
cccaaaaaccattcacctgccaaacctaaaacaaacaccggtgctaaaccgaatggctcc
actcgtgcaaaaaaacgcaatactcaaaataaacctaccaaccgacctgataattttgga
aatcggtaa
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