Clavibacter zhangzhiyongii: H9X71_00165
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Entry
H9X71_00165 CDS
T07408
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
czh
Clavibacter zhangzhiyongii
Pathway
czh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
czh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H9X71_00165
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
czh03019
]
H9X71_00165
03400 DNA repair and recombination proteins [BR:
czh03400
]
H9X71_00165
Enzymes [BR:
czh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
H9X71_00165
Messenger RNA biogenesis [BR:
czh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
H9X71_00165
DNA repair and recombination proteins [BR:
czh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
H9X71_00165
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
DUF3553
HEM4
MarR_2
PcrA_UvrD_tudor
DUF7342
Motif
Other DBs
NCBI-ProteinID:
QOD43833
UniProt:
A0A7L7Z273
LinkDB
All DBs
Position
34942..36747
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AA seq
601 aa
AA seq
DB search
MKQNRTEGTTRSTRTATRRPAEDRAPAPGPAAEDPAVVPEPAPGPEPEDALRVAREAFGW
DELHDGQVRTIGSLVRGRDALVVMPTGYGKSAIYQVATVLMEGLTVVVSPLIALQADQVQ
NLEDAAAAPPARVINSTIRGKALEEAWATIEEPGARIVFLTPEQLARDEVVERLVARGVS
LVVIDEAHCVASWGHDFRPDYLGLGGVVDALGHPPTVAMTATGSTPIRTEIEQRLGLRDP
FVLSSGFDRPNIRLEVRRHTEDAEKRRAIVAHVAEQTQPGLVYVATRKDAEVYAEEIRAA
GLRVDAYHAGLPAAERERVQQGFHEDAVDVVVATSAFGMGIDKPTVRYVIHAAPPESVDA
YYQEVGRAGRDGEPAVGILHYRQEDLGLRRFFAARTPRPASLRDVYAAVAVAGVDGPVRP
AAVAERAGMSARTVGGVLNLLVDAGVLGSDRDGAFVTEELDPREAAARAKEVAAERERIE
VSRLEMMRGYAEAPHCRRQYLLGYFGEDSPERCGNCDVCDRLDEDDAHEEAMGTADAAPD
AADAGASDEAFPAQSQVTHAEWGPGTVMSTEDDRITVFFEKEGYRVLSRKLVEEGELLRP
S
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
gtgaagcagaaccgcaccgagggcacgacccgctcgacccgcaccgccacccgccgcccc
gccgaggaccgcgcgcccgctccgggcccagccgccgaggatccggccgtcgtccccgag
cccgcgccgggacccgagcccgaggacgcgctgcgcgtcgcccgcgaggccttcggctgg
gacgagctgcacgacggccaggtgcgcacgatcggttcgctcgtccgcggccgcgacgcg
ctcgtcgtgatgcccacgggctacggcaagtccgccatctaccaggtcgcgaccgtgctg
atggagggcctgaccgtcgtcgtctcgcccctcatcgcgctgcaggccgaccaggtgcag
aacctcgaggacgcggccgcggcgccgcccgcgcgcgtgatcaacagcacgatccgcggg
aaggccctcgaggaggcgtgggcgacgatcgaggagcccggcgcccggatcgtcttcctc
acgcccgagcagctggcccgcgacgaggtcgtcgagcggctcgtggcgcgcggggtgtcg
ctcgtggtgatcgacgaggcgcactgcgtcgcgtcgtggggccacgacttccggcccgac
tacctggggctcggcggcgtggtcgacgcgctcgggcacccgccgaccgtcgcgatgacg
gcgacgggatccacgcccatccgcaccgagatcgagcagcggctcgggctgcgcgacccg
ttcgtgctgtccagcggcttcgaccggccgaacatccggctcgaggtgcgccggcacacc
gaggacgcggagaagcggcgcgcgatcgtcgcccacgtcgcggagcagacgcagccgggc
ctcgtctacgtcgcgacgcgcaaggacgccgaggtgtacgccgaggagatccgggccgcg
ggcctgcgggtcgacgcgtaccacgcggggctcccggccgccgagcgcgagcgcgtgcag
caggggttccacgaggacgccgtggacgtggtggtcgcgacgagcgcgttcggcatgggg
atcgacaagccgaccgtgcggtacgtcatccacgcggcgccgcccgagtcggtcgacgcg
tactaccaggaggtgggtcgcgcgggccgcgacggggagccggccgtggggatcctgcac
taccggcaggaggacctcggcctccgccgcttcttcgcggcgcgcacgccgaggcccgcg
agcctgcgcgacgtgtacgcggccgtcgcggtggccggcgtcgacggacccgtgcggccc
gccgccgtcgccgagcgggccggcatgtcggcgcggaccgtcggcggggtgctcaacctg
ctcgtggacgcgggcgtgctcggatccgatcgcgacggcgcgttcgtgacggaggagctg
gatccgcgcgaggccgccgcccgcgccaaggaggtggccgcggagcgcgagcgcatcgag
gtctcgcgcctggagatgatgcgcggctacgccgaggcgccgcactgccgccgccagtac
ctgctcggctacttcggcgaggactccccggagcgctgcggcaactgcgacgtgtgcgac
cggctcgacgaggacgacgcgcacgaggaggcgatggggacggcggacgcggctcccgac
gccgccgacgcgggcgcctccgacgaggcgttccccgcgcagtcgcaggtcacccacgcg
gagtgggggcccggcaccgtgatgagcacggaggacgaccggatcaccgtcttcttcgag
aaggaggggtaccgcgtgctgtcgcggaagctggtggaggagggggagctgctgcggccg
agctga
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