Clavibacter zhangzhiyongii: H9X71_05770
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Entry
H9X71_05770 CDS
T07408
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
czh
Clavibacter zhangzhiyongii
Pathway
czh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
czh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H9X71_05770
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
czh03019
]
H9X71_05770
03009 Ribosome biogenesis [BR:
czh03009
]
H9X71_05770
Enzymes [BR:
czh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
H9X71_05770
Messenger RNA biogenesis [BR:
czh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
H9X71_05770
Ribosome biogenesis [BR:
czh03009
]
Prokaryotic type
rRNA helicases
H9X71_05770
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
adh_short
HEM4
AAA_22
UvrA_inter
Cas3-like_C_2
AIRS_C
Motif
Other DBs
NCBI-ProteinID:
QOD44820
UniProt:
A0A7L7Z4X6
LinkDB
All DBs
Position
complement(1203016..1204776)
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AA seq
586 aa
AA seq
DB search
MSTDDTASTPDADAAPRTTFSDLGLSDQVLKALKDVGYETPSAIQAATIPSLLSGRDVLG
VAQTGTGKTAAFALPILSNLDVSQKTPQALVLAPTRELALQVCEAFERYASGMRGVHVLP
VYGGQGYGVQLSALRRGVHVVVGTPGRIMDHLDKGTLDLSQLKFLVLDEADEMLKMGFAE
DVETILADTPKSKQIALFSATMPAQIRRISGKYLQDPEEITVKNKTTTSANTTQRYLMVS
YPQKVDALTRILETENFEGMIVFVRTKNETETLAEKLRARGYAAAAISGDVAQAQRERTV
EQLKSGKLDILVATDVAARGLDVERISHVVNYDIPIDTESYVHRIGRTGRAGRSGAAISF
VTPRERRLLTAIEKATRQPLTEMRMPSAEDVNVTRLTRFDDAITSALQDRERLDAFRDIV
GHYVNHHDVVESDVAAALAIVAQGDTPLLLSADDLRPPRVERERRDDRPGRDGDDRGERR
ARPARGSGNMATYRIDVGRRHRVEPRQIVGALANEGGFSREDFGHIDIRPDFSLVELPAG
LAQDKLDKLASTVINGRPIDIRPDRGGPRAAERGAAPERRGRKPRD
NT seq
1761 nt
NT seq
+upstream
nt +downstream
nt
atgagcactgacgacaccgcatccacccccgacgcggacgccgccccccgcacgaccttc
agcgacctcggtctctccgaccaggtcctcaaggccctcaaggacgtgggctacgagacc
ccctcggccatccaggccgccaccatcccctccctcctctccggccgcgacgtcctcggc
gtcgcccagaccggcaccggcaagacggccgcgttcgcgctgcccatcctcagcaacctc
gacgtgtcgcagaagacgccgcaggccctcgtgctggcgcccacccgcgagctcgcgctc
caggtgtgcgaggcgttcgagcgctacgcgtccggcatgcgcggcgtgcacgtgctcccc
gtctacggcggccagggctacggcgtgcagctgtcggccctccgccgcggcgtgcacgtg
gtcgtcggcacccccggccgcatcatggaccacctcgacaagggcaccctcgacctgtcg
cagctgaagttcctcgtgctcgacgaagccgacgagatgctcaagatgggcttcgcggag
gacgtggagacgatcctcgcggacaccccgaagtcgaagcagatcgcgctgttctcggcc
acgatgcccgcgcagatccgccgcatctcgggcaagtacctgcaggaccccgaggagatc
acggtcaagaacaagaccacgacctcggcgaacaccacgcagcgctacctgatggtgtcg
tacccgcagaaggtcgacgccctcacgcgcatcctcgagaccgagaacttcgagggcatg
atcgtgttcgtccgcaccaagaacgagaccgagacgctcgccgagaagctgcgggcccgc
gggtacgcggcggccgccatctcgggcgacgtcgcccaggcccagcgcgagcgcacggtc
gagcagctgaagtccggcaagctcgacatcctcgtggccaccgacgtcgcggcgcgcggc
ctcgacgtggagcgcatcagccacgtcgtcaactacgacatcccgatcgacaccgagtcg
tacgtgcaccgcatcggccgcacgggccgcgcgggacgcagcggcgcggcgatcagcttc
gtcacgccgcgcgagcgccgcctcctcaccgccatcgagaaggccacgcgccagcccctc
accgagatgcgcatgccgagcgccgaggacgtcaacgtcacgcgcctcacccgcttcgac
gacgccatcacgtccgcgctgcaggatcgcgagcgcctcgacgcgttccgcgacatcgtg
ggccactacgtcaaccaccacgacgtcgtcgagtccgacgtcgccgccgcgctcgccatc
gtggcgcagggcgacaccccgctcctcctctcggccgacgacctccgcccgccgcgcgtc
gagcgcgagcgccgggacgaccgcccgggccgcgacggcgacgaccgcggcgagcgccgg
gcccgtcccgcgcgcggcagcggcaacatggccacgtaccgcatcgacgtcggccgacgc
caccgcgtcgagccccgccagatcgtcggcgcgctcgccaacgagggcggcttcagccgc
gaggacttcggccacatcgacatccgcccggacttctcgctcgtcgagctgccggccggg
ctcgcgcaggacaagctcgacaagctggcgagcacggtcatcaacggccgcccgatcgac
atccgccccgaccgcggcggcccccgtgccgccgagcgcggcgcggcccccgagcgccgg
ggacgcaagccccgcgactga
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