Corynebacterium zhongnanshanii: IAU67_05040
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Entry
IAU67_05040 CDS
T07917
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
czo
Corynebacterium zhongnanshanii
Brite
KEGG Orthology (KO) [BR:
czo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
czo03019
]
IAU67_05040 (hrpA)
Enzymes [BR:
czo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
IAU67_05040 (hrpA)
Messenger RNA biogenesis [BR:
czo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
IAU67_05040 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
HA2_C
AAA_19
HA2_N
nSTAND3
AAA_22
AAA_25
ResIII
PhoH
T2SSE
NACHT
AAA_24
SRP54
Motif
Other DBs
NCBI-ProteinID:
QNP93222
LinkDB
All DBs
Position
1114668..1118498
Genome browser
AA seq
1276 aa
AA seq
DB search
MTYPDLPVSDRRQEIMDAISAHQVVIIAGETGSGKTTQIPKMCLDLGRGRRKIIGHTQPR
RIAARSVAERIAEETNCTIGDPASLVGYKIRFDDTLSSHTAVKLMTDGVLLNEIQHDRLL
HDYDTIIIDEAHERSLNIDYLLGYLKQLLPRRPDLKVIITSATIDPESFAEHFKDADGEP
APIIEVSGRTYPVEVRYRPLYTERLNEKTGEIVRDEIDPLDGLVAACQELMREGQGDILC
FFSGEREIRDAAEVLSGEFTAKGRGPGVDILPLFGRLSNAEQHRVFQPQGTRRRIVLATN
IAETSLTVPGIHYVIDTGVARISRYSHRTKVQRLPVEPISQASAQQRSGRCGRTADGIAI
RLYSEEDFEARPEFTDPEILRTHLASVILSMAALNLGSIEEFPFIQAPDRRSIRDGVALL
QELGALTPDKRQELTPIGRDLARIPTDPRLARMLVEGHRNNVMEPLCVIVAALSIQDVRE
RPLEHQQKADELHARFAADSDFIGVLRLWNYLQEQRQSLSGNQFRKLCQQEFLHYMRIRE
WMDLVRQLLTVIQDLSWSIPNIPHVRELVFAADSINEDMIHKSILSGLLTHVGMREGNSK
QFTGTRNSRFVIHPSSHAAKKPPQWVMAAELVETSQIFARSVAPIAPEWLEELAPHLTKT
TYSEPHWSSRKGAAMATQKVLLLGLPVIADRPVLLGKVDKETARELFIRHALVEGDWRTR
HHFYKHNLELLEQASSLEDKVRRRDIIVDDQTLFDFYDARLPDHIISARHFDSWWKKARH
KNPERLNFSLDKLIESHEGAAEADEFPDTWKQGSLEFELSYVFRPGDPDDGITMRIPLPL
LGNVSAADAQWLVAGMRQELVIVLIKSLPKALRTSVVPANQFAEQALKRMVPFDGPIDVA
LADALRQLGGVGISASDFNWERVPDHLRMQFAAIDRRGKVVKKSRVLADLQTSLKAQVTS
AVAQASARQAPSPNDGAAHSSRSGGTSTGDVLASAGRWDADGIGVIPETMSTVIDGQTVE
TYPALVKSPQGVDLKAFPSQQAAAGQQFKFVLDSMTSACTVSAPQMLKGLPLRQRVALES
GVAGGFEPLLADIVTVACKDILMSAGPIVRDPDTCAEVIDSARRRGPSLVRQYVVAVAPA
ILAVADMRAELKGWSGAAIEDMNAQLEFFAGPHALARHGVQPFQHVPRYVAAMKERLELL
DRDPDREADLDDQVQEAIAALEDTLRRLPSTRAASPQVKEVRWMIEEFRVSLFAQHLGTT
RTVSLPRIRKALAKIR
NT seq
3831 nt
NT seq
+upstream
nt +downstream
nt
atgacgtaccccgaccttcccgtctctgaccggaggcaggaaatcatggatgccatcagc
gcccaccaggtggtcatcatcgccggagaaacgggatcgggaaaaaccactcagatcccg
aagatgtgtcttgacctgggccgtgggcgtcggaaaatcatcgggcacacccagccccgc
cgcatcgcagcacgcagcgtggcggagcgcatcgcagaagagacgaactgcaccatcggc
gaccccgcatccctcgtgggatacaagatacgattcgacgacaccctctcgtcccacacc
gccgtgaaattgatgaccgatggcgtgctgctcaacgagattcagcacgatcgtctcttg
cacgactacgacaccatcatcatcgacgaggcccacgagcgctccctcaacatcgactac
ctcctgggctacctcaagcagctgcttccccgccgccccgatctgaaggtcatcatcacc
tcagcgacgatcgaccccgaaagctttgccgaacatttcaaggatgccgacggcgaaccc
gcccccatcatcgaagtgtccgggcgaacctaccctgtcgaggtgcgttatcggccactg
tataccgaaaggctcaacgagaaaacaggtgagatcgttcgcgacgagatcgaccccctc
gacggcctggtcgcagcctgtcaggaactcatgcgggaaggccagggagacatcctgtgc
ttcttctccggcgagagagagattcgcgacgccgccgaggtgctctcgggagaattcacc
gcgaagggacgcgggcccggcgtcgatatcctccccctgtttggtcgtttgtctaacgcg
gaacagcatcgcgtgttccagccgcaaggaacacggcgacgcatcgtgctggcgaccaac
atcgcggagacgtccctgacagtgccggggatccactacgtgatcgacaccggcgtggcc
aggatttcccgctattcccacaggaccaaggttcagcgccttccggtggagcccatcagc
caggccagcgctcagcagcgttcgggacgctgtggacgtaccgccgacggcatcgccatc
cggctgtactcggaggaggacttcgaggctcggccggagttcaccgacccggagatcctg
cgcacgcacctggcgagcgtcatcctgtccatggcggcgttgaatcttgggtctatcgag
gagtttccgtttattcaggcgccagatcgtcggtcgattcgcgatggtgttgccctgctg
caggagctgggggcgctcaccccggataaaaggcaagagttgacgcccatcggccgcgac
ctggcgcgcatccctacggacccgcgtcttgcccgcatgcttgtggaaggccaccgcaac
aacgtcatggaaccactgtgcgtgatcgtggccgcgctcagcatccaggacgtgcgggag
cgcccgttggagcaccagcagaaggccgacgagctgcacgcccgcttcgccgccgattct
gatttcatcggcgtgcttcgcctgtggaactacctgcaggaacagcggcagtcgctgtcc
ggtaatcaattccggaagctttgccagcaggagttcctgcactacatgcgcatccgggaa
tggatggatctggtccgtcagctgctgaccgtcattcaggacttgtcctggtctatcccg
aacatcccccacgtgcgtgaattagtgttcgccgcggacagcatcaacgaggacatgatt
cacaaatccatcctctcgggcttactcacccatgtgggcatgcgtgagggaaactcgaag
cagtttacgggcacccggaactcccgctttgtgatccacccttccagccacgcggctaaa
aagccgccacagtgggtaatggctgccgagctggtcgaaaccagtcagatcttcgcgcgc
tctgtggcccccattgcgccggagtggctggaagagttggctccgcacctaaccaaaacc
acctattcggagccgcactggtcttccaggaagggcgccgccatggcgactcagaaggtt
ttgctgttggggctgcctgtcattgcggatcggcctgtcttgctgggcaaggttgataag
gagactgcccgcgagctcttcatccgccatgcgctggtggagggtgactggcggactcgc
caccacttctacaagcacaatctggagcttctggagcaagccagctctttggaggataag
gttcgccgccgggacattatcgttgatgaccagacactcttcgacttctacgacgcccgc
cttcccgaccacattatctccgcccgccactttgattcgtggtggaagaaggcccggcat
aagaatcccgagcgactgaatttctccctcgacaagctcattgagtctcacgaaggcgcc
gcggaggccgatgagtttccggacacgtggaagcagggttcgctggagttcgagctgtcc
tatgtgttccgtcccggagatcccgatgacggcatcacgatgcgcattccgctgccgctg
ctcggcaatgtgtccgctgccgatgctcagtggctggtggcgggcatgaggcaggaattg
gtcattgttctgatcaagtccctgccgaaggctttgcgcacctcggtggtgccggcgaat
cagtttgctgagcaagcgttaaagcgcatggtgccttttgatggcccaatcgacgtggcc
ttggccgacgcgcttcggcagctgggtggtgtgggcatttctgcctcggatttcaattgg
gagcgcgtgcctgatcacctgaggatgcagttcgcggcgattgatcgccgggggaaggtg
gtgaagaagtctcgcgttttggctgatttgcagacgtctctgaaggcgcaggtcacgagt
gctgtggctcaagcttctgctcggcaggcaccgtcgccgaacgatggcgctgcccactcc
tcgcgttcgggtggcacatcgaccggtgatgttctcgcctcggcagggcgatgggatgcc
gacggtatcggggtgattccggagacgatgtccaccgtgattgatggacagactgtcgag
acgtacccggcgttggtgaagtcccctcagggtgtggatctgaaggcattcccctcgcag
caggctgctgcaggccaacagttcaagttcgtgctggactctatgacgtcggcctgtacc
gtctctgccccgcaaatgctgaagggcttgccgctgcgtcagagagtcgcgctggaaagc
ggtgttgcaggcggttttgagcccctgcttgccgatattgtaacggtggcctgcaaggat
attctgatgtccgcggggccgattgtgcgtgatcctgacacctgcgccgaggtgatcgat
tcagcccgacgccgagggccctcgttagtgaggcagtacgtggtagctgtggctcccgct
atcttggcggtggccgacatgcgtgctgagctgaagggttggtctggcgcagccattgag
gacatgaacgcgcagctggagttcttcgcgggaccacacgcccttgcacggcatggtgta
cagccgtttcagcatgttccgcgctatgtggcggcgatgaaggagcgtctggagttgctg
gatcgtgatccggaccgcgaggctgatctggacgatcaggtccaggaggcgattgccgct
ctcgaggatacgttacgcaggctcccgtccactcgtgcagcgtccccacaggtcaaggag
gttcggtggatgatcgaggagttccgggtgagcctctttgcccagcatttgggcaccacg
cggaccgtgagtcttccgcgcattaggaaggccttggcgaagatccgctag
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