Frigidibacter mobilis: AKL17_3116
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Entry
AKL17_3116 CDS
T04387
Name
(GenBank) DEAD/DEAH box helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
daa
Frigidibacter mobilis
Pathway
daa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
daa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AKL17_3116
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
daa03019
]
AKL17_3116
03400 DNA repair and recombination proteins [BR:
daa03400
]
AKL17_3116
Enzymes [BR:
daa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AKL17_3116
Messenger RNA biogenesis [BR:
daa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AKL17_3116
DNA repair and recombination proteins [BR:
daa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AKL17_3116
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HRDC
RQC
DEAD
Helicase_C
RecQ_Zn_bind
Cas3-like_C_2
ResIII
Motif
Other DBs
NCBI-ProteinID:
AMY70349
UniProt:
A0A161HCF0
LinkDB
All DBs
Position
complement(3095960..3098011)
Genome browser
AA seq
683 aa
AA seq
DB search
MTAAPSATALLSSVFGFPSFRPGQEEIVRAVLAGQNALAIMPTGGGKSLCFQLPALCREG
VTVVISPLIALMRDQVRALREAGVEAGALTSGNTDAETEEVFAALDEGRMKLLYMAPERL
ASGATLGLLRRIGTSAIAVDEAHCVSQWGHDFRPDYLRIGDLRRALDVPLAAFTATADEE
TRAEIVTRLFDGHPPEIFLRGFDRPNIHLAFAAKDKPREQILRFADARRGQSGIVYCGTR
AKTETLAQALREAAHAACHYHGGMDPEERREVEARFQREDGLIVVATVAFGMGIDKPDIR
WVAHADLPKSIESYYQEIGRGGRDGAPAETLTLYGPDDIRYRRTQIDEGLAPPERKAADH
GRLNALLGLAEATACRRQRLLAYFGETAAPCGNCDLCDTPPEVFDATEPVRKALSAILRT
QETFGAGHLIDILTGNATDKVRERGHDGLPTFGVGRELSRPQWQALFRQMMGHDLVRPDA
ERHGALRMTDIARPILRGEAQIILRRDTVARAQSRPVAKALVNEEDAPLLSALKAKRRAL
AEAARVPPYIIFNDRTLIEMAETRPASLDAMAHITGVGAKKLESYGAEFLAVITGAAEHM
HPSRLRLAGRPEGALFDRLAEAQLALARGEDGTQKPLSCTAATLRQIAERRPRSLDDLAR
LPGMDEARAGRFGAAFLAVLTEA
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atgaccgccgccccctctgccacagcgctcctgtcctcggtcttcggcttccccagcttc
cggccggggcaagaggagatcgtgcgcgcggtgctggccgggcagaacgcgctggcgatc
atgcccacgggtggcggcaagtcgctgtgcttccagctgccggcgctctgccgcgagggg
gtgacggtggtgatctcgccgctgatcgcgctgatgcgcgaccaggtccgcgccctgcgc
gaagcgggagtcgaggcgggggcgctgacctccggcaataccgatgccgagaccgaggag
gtcttcgccgcgctggacgaaggccgcatgaagctgctctacatggcgcccgaacggctg
gcctcgggcgcgacccttggcctgctgcgccggatcggcaccagcgcgatcgcggtggac
gaggcgcattgcgtaagccaatggggccatgacttccgccccgactacctgcggattgga
gatctgcgccgggcgctggatgtgccgctggccgccttcactgccaccgcggatgaagag
acgcgggccgagatcgtcacccgcctgttcgacggccacccgcccgagatcttcctgcgc
ggcttcgaccggcccaacatccaccttgccttcgccgcgaaggacaagccgcgcgagcag
atcctgcgctttgcggatgcccgccgcggccagtccggcatcgtctattgcggcacccgt
gccaagaccgagacgctggcacaggcgctgcgcgaggccgcccacgccgcctgccactat
cacggcggcatggacccggaggagcggcgcgaggtcgaagcgcggttccagcgcgaggat
gggctgatcgtggtggcgacggttgccttcggcatgggcatcgacaagcccgacatccgc
tgggtcgcccatgccgacctgccgaagtcgatcgagagctattatcaggaaatcggccgc
ggcggccgcgatggtgccccggccgaaaccctcaccctctacggccccgacgacatccgc
tatcgccggacccagatcgacgagggccttgccccgcccgaacgcaaggccgccgatcat
ggccggctgaacgcgctgctgggtctggccgaggcgaccgcctgccgccgccagcgcctg
ctggcctatttcggcgagacggcagcaccctgcggcaattgcgacctctgcgacacgccg
cccgaggtcttcgatgcgacagagccggtgcgcaaggcgctgtcggcgatccttcgcacc
caggaaaccttcggcgcgggccacctgatcgacatcctgaccggcaatgccaccgacaag
gtgcgcgagcgcggccatgacgggctgccgaccttcggcgtggggcgcgagctgtcgcgc
ccgcaatggcaggcgctgttccggcagatgatgggccatgatctcgtgcgccccgatgcc
gagcgccacggcgcgctgcggatgaccgacatcgcccgcccgatcctgcgcggcgaggcg
cagatcatcctgcgccgcgataccgtggcccgcgcgcaatcgcgcccggtggcgaaggcc
cttgtcaacgaggaggacgcgccgctgctgtccgcgctcaaggccaagcgccgggcgctg
gccgaggcggcgcgcgtgcccccctatatcatcttcaacgaccgcaccctgatcgagatg
gccgagaccaggcccgccagcctcgatgcgatggcccatatcaccggcgtcggcgccaag
aagctggaaagctatggggccgaattccttgccgtgattaccggcgcggcggaacacatg
cacccctcgcgcctgcgccttgccgggcgccccgaaggcgcgctgttcgaccggctggcc
gaggcgcaactggccttggcgaggggtgaggacggcacgcaaaagccgttgtcctgcacc
gccgccaccctgcgccagatcgccgagcggcggccgcgcagccttgatgacctcgcccgc
ctgcccggtatggacgaggcccgcgccggccgtttcggggccgccttccttgcggtgctg
accgaggcctga
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