Deinococcus actinosclerus: AUC44_08840
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Entry
AUC44_08840 CDS
T04259
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
dab
Deinococcus actinosclerus
Pathway
dab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AUC44_08840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dab03019
]
AUC44_08840
03400 DNA repair and recombination proteins [BR:
dab03400
]
AUC44_08840
Enzymes [BR:
dab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AUC44_08840
Messenger RNA biogenesis [BR:
dab03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AUC44_08840
DNA repair and recombination proteins [BR:
dab03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AUC44_08840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HRDC
RQC
DEAD
RecQ_Zn_bind
Helicase_C
Motif
Other DBs
NCBI-ProteinID:
ALW88981
UniProt:
A0ABM5X5S3
LinkDB
All DBs
Position
complement(1814513..1816741)
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AA seq
742 aa
AA seq
DB search
MSVPARDHAAPDPAVLTPALDLLKRVWGYGAFRGVQAQIVQTVAQGGNAMVLMPTGGGKS
LCYQVPSLLRPGVGIVVSPLIALMKDQVDTLRGLGVRAAYLNSTLSLDGVREVEAALLAG
ELDLLYVAPERLLLPRTLDLLDRAPVALFAVDEAHCVSQWGHDFRPEYQGLTVLPERFPE
VPRMALTATADDRTRADILRVLDLGGAPQFVSSFDRPNIQYRVGQKDSPKTQLLDFIRAE
HAGDAGIVYCLSRKSVEETARWLQAQGLDAVAYHAGLPPRERTHAQDRFLNEEGLVVVAT
VAFGMGIDKPNVRFVAHLDLPKSMEGYYQETGRAGRDGLPSTAWMVYGLADVVNVRRMLA
SSDAPEEVKRVEAGKLDALLTFCETAACRREVLLAYFGEEYHGPCGNCDTCLNPPQVRDM
TREAQMALSAAIRTGNRFGAAHLTDVLLGRATEKVVSMNHHTLPTFGVGAAHDEKTWRGV
LRQLVSLGFLAAGEHHGLSATGKARSLLKGETTLTLRADTLMPRASRRAEKQPRVGRAPV
ATEDQPLFEALRAWRLDRARSLGVPPYVIFTDATLKGVTELKPTSHASLGTVSGVGQRKL
ADFGDEVVQIVRDSLDGRPAAPARTVTPQERGARDNAAVLGALRACPQEPADPAPALLGQ
PQPDPAQTGRVEAALREVRRTLTQETGLSAFLIFPNAALDALAQRQPRSEADLHGIPGFG
PKRIETYGARVLATIRDALTPD
NT seq
2229 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtgcccgcccgtgaccacgctgcccccgatcccgccgtcctgacccccgccctc
gacctcctcaagcgcgtctgggggtacggcgcgttccggggcgtgcaggcgcagatcgtg
cagacggtcgcgcagggcggcaacgccatggtcctgatgcccaccggcggcggcaagagc
ctgtgctatcaggtccccagcctgctgcgccccggcgtggggatcgtggtctcgccgctg
atcgccctcatgaaggatcaggtggataccctgcgcggcctgggcgtgcgcgccgcgtac
ctgaactccaccctgtccctggacggcgtgcgcgaggtcgaggccgccctgctggccggg
gagctggacctgctgtacgtcgccccggagcgcctgctgctgccccgtacgctggacctg
ctggaccgcgccccggtcgccctgttcgcggtggatgaggcgcactgcgtctcgcagtgg
gggcacgacttccgccccgagtaccagggcctgaccgttctgcccgaacgcttccccgag
gttccgcgcatggccctgaccgccaccgccgacgaccgcacccgcgccgacatcctgcgc
gtgctggacctgggcggcgcgccgcagttcgtgtcgtccttcgaccggccgaacatccaa
taccgggtggggcagaaggacagccccaagacccagctgctggacttcatccgcgccgag
cacgccggggacgcggggatcgtgtactgcctgtcgcgcaagtccgtcgaggagacggcc
cgctggcttcaggcgcagggcttggacgccgtcgcgtaccacgcggggctgccgccgcgc
gaacgcacccacgcgcaggaccgcttcctgaacgaggaggggctggtcgtggtcgccacc
gtcgccttcggcatgggcatcgacaagcctaatgtgcggttcgtggcccacctggacctg
cccaagagcatggaaggctactaccaggagacgggccgcgccggacgcgacgggctgccc
agcaccgcctggatggtctacggcctcgcggacgtggtgaacgtgcgccgcatgctggcc
tccagcgacgcgcccgaggaggtcaagcgggtggaggccgggaagctcgacgccctgctg
accttctgcgagaccgccgcctgccgccgcgaggtgctgctggcgtacttcggcgaggag
tatcacggcccctgcgggaactgcgacacctgcctgaaccccccgcaggtgcgcgacatg
acccgcgaggcgcagatggcgctgtccgccgcgatccgtaccggcaaccgcttcggcgcg
gcgcacctgacggacgtgctgctgggccgcgccaccgagaaggtcgtcagcatgaaccac
cacaccctgcccaccttcggggtgggcgcggcgcacgacgagaaaacgtggcggggcgtg
ctgcgccagctcgtcagcctgggtttcctggccgccggggaacaccatggcctgagcgcc
accggcaaggcccgctcccttctgaagggcgagaccaccctgaccctgcgcgccgacacc
ctgatgccgcgcgcctcccgccgggccgagaagcagccccgcgtgggccgcgccccggtg
gccaccgaggatcagccgctgttcgaggcgctgcgcgcgtggcgcctcgaccgcgcccgc
agcctgggcgtgccgccgtacgtgatcttcaccgacgcgaccctcaagggcgtcacggaa
ctcaaaccgaccagtcacgccagcctgggcaccgtcagcggggtcgggcagcgtaaactc
gcggatttcggggacgaggtggtgcagatcgtgcgtgacagcctggacgggcggcccgcc
gcgcctgcccggacggtcacgccccaggaacgcggggcgcgtgacaatgccgccgtgctg
ggtgccctgcgcgcctgcccgcaggaacctgccgacccggccccggccctgctgggccag
ccgcagcccgacccggcgcagaccgggcgggtggaggcggcgctacgcgaggtgaggcgc
accctgacgcaggagaccggcctgagtgcttttctgatcttcccgaacgcggccctggac
gccctcgcgcagcgccagccgcgcagcgaggcggatctgcacggcatcccgggcttcggg
ccgaaacgcatcgagacctacggcgcgcgggtgctcgccaccatccgcgacgccctgacc
cctgactga
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