Delftia acidovorans: Daci_3778
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Entry
Daci_3778 CDS
T00620
Name
(GenBank) UvrD/REP helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
dac
Delftia acidovorans
Pathway
dac03420
Nucleotide excision repair
dac03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Daci_3778
03430 Mismatch repair
Daci_3778
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dac03400
]
Daci_3778
Enzymes [BR:
dac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Daci_3778
DNA repair and recombination proteins [BR:
dac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Daci_3778
MMR (mismatch excision repair)
Other MMR factors
Daci_3778
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
AAA_22
Viral_helicase1
DEAD
AAA_12
ResIII
AAA_16
NAD_binding_10
Motif
Other DBs
NCBI-ProteinID:
ABX36410
UniProt:
A9C2R1
LinkDB
All DBs
Position
complement(4153814..4155883)
Genome browser
AA seq
689 aa
AA seq
DB search
MGARRRRHGGFHCHGPCFHPLSTTFPRFAPMSLRSLEFPTDHGQPLLLSREQQAILAHEG
RSAIVAALAGVGKTTTLACKVVQACRSGQAQRILVLAYSRSGVAAFHHRLKQLVREVPPQ
VQITTVERWAAQQIRRRDPAARFLADRVALQARVREAHAALCERLAWQPDPLFEQPGDLD
LDAFWDFNLSAKKSLMPQRLAEEGMGLASFCEEYLLDYRMAGLFFEYERRRIDHCGDPLY
YAEGDCSHALASDALQGQALDLPRYDLVVFDEMHDLDPASLQLLRALVGTSGCAFLGAGD
FNQHIEAQAWSVFRDKLHQLDDFLPQATATLALTQSRRFGPQIAKAVNALFNVGLTAAPT
RFSTVQQLQHTDDSQCIDQLLQIQAGLARGTPTAAPGELPSPGARNPSLTVILRHEQDAC
ALEWAIHRAGKSASFYGFKRFYLQREIALLLGLCYAHGMQALSWKAEVSVLGSEILAAFV
EGALFYGKGSVDGADMADPSSRHTLAQRMAGEMLHNPQIIWRFLGNQSSLQGGQRNFQAF
GSFLQLPLALQSDARSLLEQADVWGLFAGVALSQAQTAALRQRVKAFMDSVAGMAVPDML
VQVAAMATRFERTVRAERGFDFHLSTIEEAKGKEYEHVALPFMEPGRFPASAPHALAFLE
RNRLYVAMTRARKRLWLLEHAERRVQPFA
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atgggtgcccgccgtcgtcgccacggcggttttcattgccacggcccgtgcttccacccg
ctttccaccactttcccccgattcgctccgatgtccctgcgctccctggaatttcccacc
gatcacggccaaccgctgctgctgtcgcgcgagcagcaggccatcctggcgcatgaggga
cgttcggccatcgtggcggcgctggcaggcgtgggcaagacgaccacgctggcctgcaag
gtggttcaggcctgccgcagcggccaggcccagcgcatcctggtgctggcctattcgcgc
tccggcgtggcggcctttcaccaccggctcaagcaactggtgcgcgaagtgccgccccag
gtacagatcaccacggtggagcgctgggcggcccagcagatccgccgccgcgaccctgcg
gcccgctttctggccgaccgcgtggcactgcaggcccgtgtgcgcgaggcacatgccgcg
ctgtgcgagcggctggcctggcagcccgaccctttgttcgagcagcccggcgatctggat
ctggacgccttctgggacttcaacctcagcgccaagaagtcgttgatgccccagcgcctg
gccgaggaaggcatgggactggccagtttctgcgaggagtatttgctcgactaccgcatg
gccggcctgttcttcgagtacgagcgccgccgcatcgaccactgcggcgacccgctgtac
tacgccgaaggcgactgcagccatgcactggccagcgacgccctgcagggccaggcgctg
gatctgccgcgctacgacctggtggtgttcgatgagatgcatgacctggacccggcctcg
ctgcaactgctgcgcgccctggtcggaaccagcggctgcgccttcctgggcgcaggcgat
ttcaaccagcacatcgaggcacaggcctggtccgtgttccgcgacaagctccaccagctc
gatgacttcctgccccaggccacggccacgctggcgctgacccagtcgcggcgctttggc
ccgcagatcgccaaggcggtcaatgcgctgttcaacgttggcctgactgcggcgcccacg
cgcttcagcaccgtgcagcaactgcagcacaccgatgacagccagtgcattgaccagctg
ctgcagatccaggccggtctggcacgcggcacgccaacggcggcgccgggtgagctcccg
tcgcccggcgcgcgcaatccctcgctgaccgtgatcctgcgccatgagcaagatgcctgc
gcgctggaatgggccatccaccgcgccggcaagtccgccagcttctacggcttcaagcgt
ttttacctgcagcgcgagattgccctgctgctgggcctttgctatgcacatggcatgcag
gcgctgtcatggaaggccgaggtcagcgtgctgggcagcgagatcctggcggcctttgtg
gaaggtgcgcttttctacggcaagggcagcgtggatggtgccgacatggccgatccgtca
agccgccatacgctggcccagcgcatggcgggcgagatgctgcacaacccgcagatcatc
tggcgattcctgggaaaccagtccagcctgcagggcgggcaacgcaacttccaggccttt
ggcagcttcttgcaactgcccctggcgcttcagtcagacgcacgcagcctgctggagcag
gccgatgtctggggcctttttgcgggcgtggccctgtcgcaggcccagacggcggccttg
cgtcagcgcgtgaaggctttcatggattcggtggcgggcatggccgtgcccgacatgctg
gtccaggtggccgccatggccacgcgcttcgaacgaaccgtgcgggccgagcgcggcttc
gactttcatctgagcaccatcgaggaagccaagggcaaggaatacgagcatgtcgccctg
cccttcatggagcctggccgctttccggcctcggccccgcacgcgctggcctttctggag
cgcaaccgcctgtacgtggccatgacgcgcgcccgaaaaaggctgtggctgctggagcat
gccgagcggcgcgtccagcctttcgcctga
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