Delftia acidovorans: Daci_4906
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Entry
Daci_4906 CDS
T00620
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
dac
Delftia acidovorans
Pathway
dac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Daci_4906
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dac03021
]
Daci_4906
03019 Messenger RNA biogenesis [BR:
dac03019
]
Daci_4906
Transcription machinery [BR:
dac03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Daci_4906
Messenger RNA biogenesis [BR:
dac03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Daci_4906
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
AAA_25
AAA
S1CSD-TOTE-2
AAA_22
Spore_III_AA
ResIII
Motif
Other DBs
NCBI-ProteinID:
ABX37535
UniProt:
A9BMJ0
LinkDB
All DBs
Position
5420531..5421793
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AA seq
420 aa
AA seq
DB search
MHLNELKALHVSEVLKQAEALEIENVGRMRKQELMFAIIKKRAKAGEQVFADGVLEILPD
GFGFLRSPDTSYTASTDDIYISPSQVRRFNLHTGDMIEGEVRTPKDGERYFALTKLDSVN
GGSPEQNKHKVLFENLTPLFPTQQLRLEREIKGEENITGRIIDIIAPIGRGQRALIVAPP
KSGKTMMMQSIAHSITANHPDVHLMVLLVDERPEEVTEMQRSVKGEIIASTFDEPATRHV
HVAEMVIERAKRLVELKKDVVILLDSITRLARAYNNVVPSSGKVLSGGVDSNALQRPKRF
FGAARNVEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNSELALNRRLYEKRVFPAIEL
NKSGTRREELLLAPEILQKTRILRQFMYNMDEIEAMELMIKNMRATKTNVDFFDMMRRGG
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgcaccttaatgaactcaaggcactgcacgtgtctgaagtcctgaagcaggccgaagcg
cttgagatcgaaaacgtcggtcgcatgcgcaagcaagagttgatgttcgccatcatcaaa
aagcgagccaaggcaggcgaacaagtgttcgccgacggcgtgctggaaatcctgccggac
ggtttcggctttctgcgcagccccgacaccagctacacggccagcaccgacgacatctac
atctcgcccagccaggtccgccgcttcaacctgcacaccggcgacatgatcgaaggtgag
gtgcgcacgcccaaggatggcgagcgctacttcgcactgaccaagctcgactccgtcaac
ggcggctcgcccgagcagaacaagcacaaggtgctgttcgagaatctgacccccctgttc
cccacccagcagctgcgcctggagcgcgagatcaagggtgaggagaacatcaccggccgc
atcatcgacatcatcgcccccatcggccgcggccagcgcgcgctgatcgtcgcaccgccc
aagagcggcaagaccatgatgatgcagagcatcgcccactccatcacggccaaccatccc
gacgtgcacctgatggtgctgctggtcgatgagcgccccgaagaagtgaccgagatgcag
cgctcggtcaagggcgaaatcatcgcctccaccttcgacgagcccgccacgcgccacgtg
cacgtggccgagatggtgatcgagcgcgccaagcgcctggtcgagctcaagaaggacgtg
gtcatcctgctggactccatcacccgcctggcccgcgcttacaacaacgtcgtgccctcg
tcgggcaaggtgctgtcgggcggcgtggactccaacgccctgcagcgccccaagcgcttc
ttcggcgcggcacgcaatgtggaagaaggcggctcgctgaccatcatcgccacggccctg
gtcgataccggcagccgcatggacgaagtgatcttcgaagagttcaagggcacgggcaac
agcgaactggccctgaaccgccgtctctacgaaaagcgcgtgttccccgccatcgaactc
aacaagagcggcacacgccgcgaagaactgctgctggctcccgagatcctgcaaaagacc
cgcatcctgcgccagttcatgtacaacatggacgagatcgaggccatggagctgatgatc
aagaacatgcgggccacgaagaccaacgtggacttcttcgacatgatgcgccgcggcggc
tga
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