Delftia acidovorans: Daci_5406
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Entry
Daci_5406 CDS
T00620
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
dac
Delftia acidovorans
Pathway
dac03410
Base excision repair
dac03430
Mismatch repair
dac03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
dac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Daci_5406
03430 Mismatch repair
Daci_5406
03440 Homologous recombination
Daci_5406
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dac03400
]
Daci_5406
DNA repair and recombination proteins [BR:
dac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Daci_5406
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Daci_5406
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Daci_5406
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
ABX38035
UniProt:
A9BNZ0
LinkDB
All DBs
Position
6000062..6001780
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AA seq
572 aa
AA seq
DB search
MKIIPREIPAQQASALRQAGVHPLLAQLYAARGVCSADELDDTPARLLPPSGLLGMEAAV
RLLADAIERGLRLCIVADYDCDGATACAVGWRGLRMLGATEVSYLVPDRVVDGYGLTPPI
ARRVKETGAEVMVTVDNGIASVEGVAEAKALGLQVVVTDHHLPGNHLPLADAIVNPNQPG
CSFESKSMAGVGVMFYVLLALRAELRARGRFDKASQPRLEALLPLVALGTVADVVRLDAN
NRRLVALGLKQIRRGQMQPGLLALFEAAGRKAFAATTFDFGFALGPRINAAGRLSDMTIG
IECLTTDDAGRAANLAQMLDAINRERRELEGGMREQALLMAEGLCEDGMTPPAAISVFDP
DFHEGVVGIVASRIKDRMHRPSFVFAASGAPGHEHELKGSGRSIPGFHLRDALDLVSKRH
PGLLLRFGGHAMAAGCTIAEAGFAVFEKALAQVAQEWLDAATLTRRIETDGPLDPDFRKP
EMVEQLNLAVWGQGFAPPTFSEQLEVLSQRLVGEKHLKLQLRHQGETVDGIWFGHTDPLP
PSACIAFRMDINEWRGERKVQFLIEGVHSDAS
NT seq
1719 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatcatcccccgcgagatccctgcacagcaggcctcggcactgcgccaggccggc
gtccaccctctgctggcccagctctacgccgcacgcggcgtgtgctccgccgacgaactg
gacgacacgcctgcacgcctgctgccaccctcgggcctgctgggcatggaggccgccgtg
cggctgctggccgatgccatagagcgcggcctgcgcctgtgcatcgtggccgactacgac
tgcgacggcgccaccgcctgcgccgtgggctggcgcggcctgcgcatgctgggcgcgacc
gaggtcagctacctggtgcccgaccgcgtggtggacggctacggcctgacgccgcccatc
gcacgccgcgtcaaggaaaccggcgccgaggtgatggtcaccgtggacaacggcattgcc
agcgtcgaaggcgtggccgaggccaaggccctgggccttcaggtggtggtcaccgaccac
cacctgcccggcaaccacctgccgctggccgatgccatcgtcaaccccaaccagcccggc
tgcagcttcgagagcaagtccatggccggtgtcggcgtgatgttctacgtgctgctggcc
ctgcgtgccgagttgcgcgcgcgcggccgcttcgacaaggccagccagccccggctggag
gccctgctgcccctggtcgccctgggcacggtggccgacgtggtccggctggacgccaac
aaccgccgcctggtcgccctgggcctgaagcagatccgccgtggccagatgcagccgggc
ctgctggccctgttcgaagccgctggccgcaaggcctttgcggccaccacgttcgacttc
ggctttgccctgggcccgcgcatcaatgccgcaggccggctgtccgacatgaccatcggc
atcgagtgcctgaccacggacgatgcgggccgcgccgccaacctggcgcagatgctggac
gccatcaaccgcgaacgccgcgaactggaaggcggcatgcgcgagcaggccctgctcatg
gccgaaggcctgtgcgaggacggcatgacgccgccggcggccatcagcgtgttcgacccc
gacttccacgagggcgtggtcggcatcgtggcctcgcgcatcaaggaccgcatgcaccgg
cccagcttcgtcttcgccgccagcggcgcgccggggcacgagcatgaactcaaaggctcg
ggccgctccattcccggctttcacctgcgcgacgcgctggacctcgtatccaagcgccac
cccggcctgctgctgcgctttggcggccacgccatggcggccggctgcaccattgccgag
gccggtttcgcggtgttcgaaaaggccctggcccaggtggcacaggaatggctggacgcg
gccacgctgacgcgccgcatagagaccgacggaccgctggacccggatttccgcaagccc
gaaatggtcgagcagctcaatctcgcggtctggggccagggctttgccccgcccaccttc
agcgagcaactggaagtgctctcacagcgcctggtcggtgaaaagcacctgaaactgcaa
ttgcgccatcagggcgaaaccgtggacggaatctggttcggccataccgacccgctgccg
ccatcggcctgcattgcctttcgcatggacatcaatgaatggcgcggagagcgcaaggtg
caattcctgatcgagggagtgcattcggacgcgtcctag
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