Dickeya ananatis: V6C41_03425
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Entry
V6C41_03425 CDS
T11170
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
dad Dickeya ananatis
Brite
KEGG Orthology (KO) [BR:
dad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
dad03009
]
V6C41_03425 (rlmD)
Enzymes [BR:
dad01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
V6C41_03425 (rlmD)
Ribosome biogenesis [BR:
dad03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
V6C41_03425 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
PCMT
Methyltransf_25
RrnaAD
MTS
Methyltransf_11
TRM5-TYW2_MTfase
Methyltr_RsmB-F
Ubie_methyltran
Cons_hypoth95
Methyltransf_15
Methyltransf_4
Methyltransf_23
Methyltransf_32
Ribosomal_L22
Methyltransf_12
Methyltrans_SAM
FtsJ
DOT1
CMAS
Motif
Other DBs
NCBI-ProteinID:
XKY18918
LinkDB
All DBs
Position
complement(780505..781839)
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AA seq
444 aa
AA seq
DB search
MAQFYSPNRRVTTRQTLTVTVNDLDPFGQGVARHQGKTVFIPGVLPGEQAEVQLTQDKRQ
FAHAKLRRLLTTSEERVAPRCPHFSVCGGCQQQHASQPLQHRSKSAALKHLMQRETGETV
PEPEVIGAAAYGYRRRARLALYYQAKTRQLQMGYRQAGSHDLVDIRACPILHPALEALLV
PLRDCLEQLQAQRRLGHVELVLAEQGPLVILRHLEPLCDADQHVLTAFAQAHGASLFAAP
QADTLECLHGDMPSYRIAGLSLAFSPRDFIQVNDDINQRMVAQALAWLELQPQDSVLDLF
CGMGNFTLPMAQHAGRVVGVEGVAALVEKGQENAQRNGLTQVTFYHHNLEEDVTRQPWAS
MGFDKVLLDPARAGAPGVMPQIVKLAPRRVVYISCNPTTLARDSKVLMAAGYRLARLTML
DMFPHTGHLESMALFLLGSEGSVK
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaattctactctccaaaccggcgcgtgacgacccggcaaacccttaccgtgacg
gtgaatgatctcgatccattcggacagggagtcgcccgtcatcagggaaaaacggtgttc
attcccggcgtcttaccgggagagcaggccgaggtgcagctaacgcaagacaaacgccag
tttgcccacgccaaattgcgacgtttgctgacgaccagcgaagaacgcgtagcgccgcgt
tgcccacatttttccgtgtgtggcggctgccagcagcagcatgccagccagccgttacag
catcgcagtaaatcggccgcactgaaacacctgatgcaacgggaaaccggtgaaaccgta
ccggagccggaagttatcggtgcggcggcctatggctaccgccgccgcgcgcgccttgca
ttatactatcaggcgaaaacacgccagttgcagatgggctatcggcaggcggggtcgcac
gacctggtggatatccgcgcctgtccgattctgcatccggcgctggaagccttactggtg
ccgttacgcgactgtctggagcagttgcaggcgcagcggcggcttgggcatgtggagctg
gtgttggcggaacaagggccgctggtcattttgcgtcatctggagccgttgtgtgacgcc
gaccagcacgtattgacggcgtttgcgcaggcgcacggtgcgtcgctgtttgccgcgccg
caagcggacacgctggagtgtctgcacggcgacatgccgtcttatcgtatcgccgggtta
tcgctggcgttcagtccgcgtgattttattcaggtgaatgatgacattaaccaacgtatg
gtggcgcaggcgttagcgtggctggaactgcaaccgcaggacagcgtgcttgacctgttt
tgcggcatgggcaatttcacgttaccgatggcgcagcatgcgggtcgggtggtcggtgtt
gagggtgtcgcggcgctggtggagaaagggcaggagaatgcccagcgcaatgggctgacc
caggtcacattttatcatcataatctggaagaagacgttacccgacaaccgtgggcgtca
atggggtttgataaagtattgcttgatccggctcgcgccggtgcgccgggtgtgatgccg
cagattgtgaaactggctccccggcgggtggtgtatatatcctgtaaccccaccacgctg
gcgagagatagcaaggtactgatggcggccggttatcgtttggcccggttgaccatgttg
gatatgtttccacataccggacatcttgagtcaatggcactgtttttgcttggttccgaa
ggttcggtaaagtag
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