Dickeya ananatis: V6C41_20460
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Entry
V6C41_20460 CDS
T11170
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
dad Dickeya ananatis
Brite
KEGG Orthology (KO) [BR:
dad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dad03016
]
V6C41_20460
Enzymes [BR:
dad01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
V6C41_20460
Transfer RNA biogenesis [BR:
dad03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
V6C41_20460
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
DUF7716
Motif
Other DBs
NCBI-ProteinID:
XKY18185
LinkDB
All DBs
Position
4608547..4610478
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AA seq
643 aa
AA seq
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MFQDNPLLAQLKQQLHSQTPRAEGIVKATDKGFGFLEADAQKSYFIPPPHMKKVMHGDRI
IVTLHTEKEREIAEPESLVEPFLTRFVGRVQKKDDRLSIVPDHPLLKDAIPCRPARGVEQ
DFKEGDWAVAEMRRHPLKGDRGFFADLTQYITTGDDPLAPWWVTLSRHNLEREAPNADAA
ELDDGSLEREDLTGLDFVTIDSASTEDMDDALYVQDNGDGTLDMTVAIADPTAYVRADSE
LDSIARQRAFTNYLPGFNIPMLPRHLSDDICSLRPNERRPVLACRMTVAADGALSQIRFF
AAWIESRAKLVYDEVSDWLEQRGDWQPQSDNIASQIRLLHRVCQARSAWRSTHALVFRDR
PDYRFLLGEKGEVLDIVTEPRRIANRIVEEAMIAANVCAAQVLRDTVGFGIYNVHTGFDP
VSIDQAVAVLESNGIHAEAQQLLTLEGFCILRRELDAQPTQFLDSRIRRFQTFAEISTAP
GPHFGLGLEAYATWTSPIRKYGDMVNHRLLKAVITHTAADKPQDDVTQQLAERRRLNRMA
ERDVSDWLYARFLKDKAGTDTRFTAEIMDVNRGGLRVRLLENGASAFIPASFIHAVRDEL
VCSQETGIVTVKGEPVYRQSDTLTVVLTEVRLETRSIIAKPAA
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaagataacccgctgcttgcgcagcttaaacagcaactccactctcagacgcca
cgagcggaaggtatcgtcaaagccaccgacaaaggatttggttttcttgaagccgacgcg
cagaagagctatttcatcccgccgccgcacatgaagaaagtgatgcacggcgaccgtatc
atcgtcacgctgcataccgaaaaagagcgcgaaatcgcggagccggaatcgctggtggaa
ccgtttctgacccgctttgtcggccgggtacagaaaaaagatgaccgcttgtctatcgtg
ccggatcatccgttgctgaaagacgccattccgtgccgcccggcgcgtggcgtcgagcag
gactttaaagaaggcgattgggcggtcgcggaaatgcgccgtcatccgttgaaaggcgat
cgtggtttctttgctgacctgacccagtacattactaccggcgatgacccgctagccccc
tggtgggtgacgctgtcgcgtcataatctggagcgcgaagcgccgaacgccgacgcggcc
gaactcgacgatggctcgcttgagcgtgaagacctgaccgggctggattttgtcactatc
gacagcgccagcaccgaagacatggatgacgccttgtacgtgcaggacaacggcgacggg
acgctggatatgacggtggccatcgccgacccgaccgcttacgtgcgtgccgatagcgag
ctggacagcattgcccgtcaacgcgcgtttaccaactatctgcccggctttaacattccg
atgctgccgcgccacttgtcagacgacatctgttcactgcgcccaaacgaacgccgtccg
gtgttggcctgccgcatgaccgtcgccgctgatggcgcactgagccagattcgcttcttt
gccgcctggatcgaatcgcgtgccaaactggtgtacgacgaggtgtcggactggctggag
cagcgtggcgactggcagccgcagagcgataacatcgccagccaaatccgtctgttgcat
cgcgtgtgtcaggcgcgcagtgcctggcgctccacccatgcgctggtgttccgcgatcgc
ccggattatcgcttcctgttaggcgagaaaggtgaagtgctggatatcgttaccgaacca
cgccgcatcgctaaccgcatcgtggaagaagcgatgatcgccgccaacgtctgcgcggca
caggtactgcgcgacaccgtcggtttcggcatttacaacgtccacaccggtttcgatccg
gtcagtattgatcaggcggttgccgtgctggagagcaacgggattcatgctgaggctcag
caactgctgacgctggaaggcttctgtatcctgcgccgtgaactggacgcccaaccgacc
cagttcctcgatagccgtatccgtcgtttccagacatttgcagaaatcagcaccgctccc
ggtccacactttggcctgggtctggaggcttacgccacctggacgtcaccgattcgtaaa
tacggcgatatggttaaccatcgtctgctcaaggccgtcatcacccataccgcagcagac
aaaccgcaggatgacgtcacgcagcaattggctgagcgtcgtcgtcttaaccgtatggca
gagcgtgacgtcagtgactggctgtacgcccgtttcctgaaagacaaagccggtaccgac
acacgctttaccgccgagattatggatgtcaatcgtggcggcttgcgtgtacgtctgcta
gaaaacggggcttccgccttcattccagcctcgtttatccacgcggtacgcgacgagctg
gtctgtagtcaggaaaccggcatcgtgacggtgaaaggcgaacccgtctatcgccaaagc
gataccctgacggtggtattaaccgaagtgcggcttgaaacgcgcagcattatcgccaaa
cccgccgcctaa
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