Dickeya ananatis: V6C41_21060
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Entry
V6C41_21060 CDS
T11170
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
dad Dickeya ananatis
Pathway
dad03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dad00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
V6C41_21060 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dad03019
]
V6C41_21060 (rne)
03009 Ribosome biogenesis [BR:
dad03009
]
V6C41_21060 (rne)
Enzymes [BR:
dad01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
V6C41_21060 (rne)
Messenger RNA biogenesis [BR:
dad03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
V6C41_21060 (rne)
Ribosome biogenesis [BR:
dad03009
]
Prokaryotic type
rRNA processing factors
V6C41_21060 (rne)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
XKY18293
LinkDB
All DBs
Position
4750247..4753525
Genome browser
AA seq
1092 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPSNYNSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALGSLELPDGMGLIVRTAGVGKSADAL
QWDLAFRLKHWEAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKILELA
KEHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVE
NRLREAVRQDRARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCNGTGTIRDNESLS
LSILRLIEEEALKENTKEVHAIVPVPIASYLLNEKREAVNAIEKRQGGVRAIIVPHDGME
TPHYAVLRIRKGEEKQTLSYMLPQLLEAEAQQATEEQVSERRAPEQPALASFTMTDISPE
EAQPAPVTPTPSVEKQAASERGLFGRFIGALKGMFSSSDAVKDKPAEAAKTESDEQEQKQ
DRRNNRRQSGRRDRPRDNREPRERDEQRRNKRSQQQNADVDTTAVAETSVQDKAVRDEQR
REQRAERQRRRQEEKRQAQNDVKELNTAAVEAEDTVAAEQEKPVQVMPRRQRRQLTQKVR
VEEGSAAGESTVENTVENVDALPLTVSYVQESPVEKAPESATSAADITDTENEVTTESNR
ENGLPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLAQASASPEMASGKVWVRYPVAQ
PQQPERVEELNTSADEQLSAAPVLATALTTLPDVTTPDITTPDITTPDITTPDITTALDT
VPASTPVEENPTAVPVLASTQQDEALAEEATQPVESTVQQAATAPLEVQEPTPQVEEPVA
PVVESIEVEYVEETPAAIVADNATTASGDESVDAQPAEPAPVIHAAVDVTPAPAVQEPVS
ASAPVVDTTVTEQLHQPHATAPMTRAPAPAYIPDAPRVSNWQRPAFEFTGKGSAGGHSAV
NQASAPATRPVE
NT seq
3279 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttgattaacgcaactcagcaggaagagttgcgtgttgccttggttgat
ggtcagcggctctacgatctggatattgaaagccctggacacgaacagaaaaaggcaaac
atttacaaaggcaaaatcacccgcattgaacccagccttgaagccgcttttgttgattat
ggcgcagagcgacatggcttccttcccctcaaagaaatcgcacgcgaatacttccccagc
aattacaactctcacggtcggccgaatatcaaagacgtgctccgtgaaggccaggaagtt
atcgttcaggtggacaaagaagagcgcggcaacaaaggggctgccttaacgacgttcatc
agtctggctggcagctatctggtgctgatgccaaataacccccgtgctggcggtatttcc
cgccgtattgaaggggatgaccgtaccgaattgaaagaagcgcttggctcactggaactg
ccggatggtatgggccttatcgtccgtactgccggggtgggtaaatccgccgacgcatta
cagtgggacctggcgtttcgtctgaaacactgggaggctatcaaaaaagcagcggaaggc
cgcccggcgccattcctgattcatcaggaaagcaatgtaattgtccgcgcgtttcgtgat
tacctgcgcccggatatcggcgaaatcctgatcgataaccccaaaattctggaattggct
aaagagcatatcgctgcgctgggccgtccggatttcagcagtaaaataaagctgtatacc
ggtgaaattccgctgttcagccattatcagatcgagtcgcagattgagtccgccttccag
cgtgaagtacgtctgccatctggcggttctatcgtcatcgataccaccgaagcgttgacc
gctatcgatatcaactccgcccgggcaacacgcggcggcgatattgaagaaaccgcgttt
aacaccaacctggaagccgccgatgaaattgcccgccagttacgtttgcgtgacctgggt
ggtttgatcgttatcgacttcatcgacatgacgccagttcgccatcaacgcgaagtggaa
aaccgcctgcgtgaagctgtccgccaggaccgggcccgaattcagattggtcgcatttcc
cgctttggtttgctggagatgtctcgtcagcgtctgagcccttcgctgggtgaatccagc
catcatgtctgccctcgctgtaatggcaccggcacgattcgtgacaacgaatcgctgtcg
ctgtctatcctgcgattgattgaagaagaggcgctgaaagaaaacaccaaagaggtgcat
gcaattgtaccggtgcctatcgcgtcttatctgctcaacgaaaaacgtgaagccgtcaac
gcgattgaaaaacgtcagggtggtgtacgcgccattatcgtcccgcacgacggtatggaa
acgccgcactacgccgtactgcgtatccgtaaaggtgaggaaaaacagaccctaagctat
atgttgcctcagttgctggaagctgaagcccagcaggcaacggaagaacaggtttctgag
cgccgggctccggagcaaccagctctggcctccttcaccatgacggacatttcaccagag
gaagcccaacccgctcccgtcaccccgaccccgagcgtggaaaaacaggctgcttccgag
cgcgggttgtttggtcgatttattggtgcgctgaaaggaatgttctcctcctctgacgcc
gttaaagataaaccggctgaagcagcgaaaaccgagtctgatgagcaggagcagaagcag
gatcgtcggaacaatcgccgtcagtccggtcgacgtgatcgtccccgtgataatcgcgaa
ccgcgtgagcgcgatgagcagcgccgtaacaaacgttcacagcaacaaaatgccgacgtc
gatactaccgcggtagcagagacatcggtgcaggataaggcggtacgtgatgaacaacgc
cgcgaacaacgcgctgaacgccaacgtcgtcgtcaggaagaaaaacgccaggcgcagaat
gacgttaaagagctgaatacggctgccgttgaagcagaagacaccgttgctgccgaacag
gaaaaaccagtacaggtgatgccgcgtcgtcaacgccgtcagttgacccagaaagtgagg
gtggaagagggcagcgcggctggagagtcgacggtagaaaatacggtagagaatgttgac
gcgttgcctctgacggtatcctacgtgcaggaatcgccggtagaaaaagcgccggaatca
gcgacctccgccgccgacattaccgacacggaaaacgaggtaacaaccgaaagcaaccgc
gaaaatggcttgccgcgccgttctcgccgctcacctcgccacctgcgcgtcagtggtcag
cgtcgtcgtcgttaccgcgatgagcgttacccaacgcagtcgccgatgccgctggcacaa
gcctcagcctcaccagaaatggcttcaggtaaagtctgggtccgttatccggttgcacag
ccacagcaaccagagcgtgtagaagagctgaacacttcggccgatgagcaactgtctgct
gcaccggtgctggcaactgccctgaccacgttacccgatgtcactacaccggatatcact
acaccggatatcactacacctgacatcactacacctgacatcactaccgctctggataca
gtgcctgccagcaccccagtcgaggaaaatccgaccgctgtgccggtcctcgcatcaacg
cagcaggatgaagccttagccgaagaagccactcaacccgtcgaaagcactgtacagcag
gcagctacagcgcctctggaagttcaagagccgacaccgcaagttgaggagccggttgcg
cctgttgtagagagcattgaagtagagtacgttgaagaaacaccggctgctatcgttgcc
gataacgccacgacagccagcggtgatgaatccgtggatgctcaacctgccgaaccagcg
ccggtgattcatgctgctgtggacgtgacacctgcccctgcggttcaggaaccggtgtct
gcatcagcgcccgttgttgataccacggtgacggaacagcttcaccagcctcacgccact
gcaccaatgacacgtgcacccgcaccagcttatattccggatgcgccgcgtgtcagcaac
tggcaacgcccggcgtttgagttcacaggcaaaggctctgctggcggtcactctgccgtt
aatcaggccagtgccccggcaactcgtcctgtggaataa
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