KEGG   Desulfofarcimen acetoxidans: Dtox_0011
Entry
Dtox_0011         CDS       T00986                                 
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
dae  Desulfofarcimen acetoxidans
Pathway
dae03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:dae00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Dtox_0011
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dae03019]
    Dtox_0011
   03400 DNA repair and recombination proteins [BR:dae03400]
    Dtox_0011
Enzymes [BR:dae01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     Dtox_0011
Messenger RNA biogenesis [BR:dae03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     Dtox_0011
DNA repair and recombination proteins [BR:dae03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      Dtox_0011
SSDB
Motif
Pfam: DEAD Helicase_C RQC HTH_40 HRDC RecQ_Zn_bind ResIII HTH_38 DUF3071 Sigma70_r4_2 HTH_IclR HTH_7 RPA_C HTH_29 HTH_24 AAA_22 DUF7342
Other DBs
NCBI-ProteinID: ACV60976
UniProt: C8VVA7
LinkDB
Position
13021..15402
AA seq 793 aa
MELKAALKKYFNFEQFRAGQREVIEYVLNKQDVLAVMPTGQGKSLCYQLPAFMLSGTTLV
ISPLVALMKDQVDSLWAKNLDQVTLINSQIDFIDYQERMTGISQGNYKLVYIAPERLRNS
RFIEQLSRIKLDLLVIDEAHCLSQWGHDFRPDYLNIKDFYQNLNYRPTILALTATATPMV
QQDILHYLDIPRAKLINSGSDRPNLYMEIIRVDKEKDKLPALRETLKNQRDNGIIYAATR
KDSEWLSVWLARHLGIKTACYHAGLNKDERSRVQEDFLGGKINTVVATNAFGMGIDKPNI
RFVIHYCLPASLEAYYQEIGRAGRDNLPSRCTLIYAAKDKQLQEWIIDNDVIKRDDLVVF
WRALKEYMQNGTSVIPIYHLEEHNLNETKQRLLVSMLERRQLIKLADKDQDNLILEAGVV
KATPDIMKEVMAEAEERINFRKEKLNAVVNWINGSSCRREILLNYFGEQKQFKHDNCCDA
CDRAKRLNLVESTLPIEVLKCVKILTRNVGRSKLADILKGSKAKDIISFSYDKVPCYGQM
SSFNRNKIMRLIDSLLGDGYLMQQGSEYPVLMLTEKGKNALENKKTLPVWEDAAPQQEKT
AGLIDDTGMKIISELKNYRLKLSQQEQKPPYVYFHDRVLEEIALMQPSSNAQLLLINGMG
EKKVAAHGQDILNIVAKYTGTDQQANIDSTATKEILLNKVKELCRSGYSIENIAQETGRA
VSTVETYLEQLVSEGKLELAELLSWEVRKQIYLVIEKFGLMSQLKIIKDNLPEDISYHYI
KLVRSALLRRYEV
NT seq 2382 nt   +upstreamnt  +downstreamnt
atggagttgaaagccgctctaaaaaaatattttaattttgagcaattcagggccggacag
agagaagttatagaatatgtattaaataagcaagatgttttggcagtaatgccaacagga
caaggtaaatcattatgctaccaacttccagcctttatgttgtcaggaacaactcttgtt
atatctcctttagtagctttgatgaaagatcaggttgattccttatgggcaaaaaacctg
gatcaggtaacattaattaacagccaaatagattttattgattaccaggaaagaatgacc
ggtataagtcaaggcaattataagttagtttatatagctccggaaagattgagaaacagt
agatttattgaacagttatccagaattaaattagatcttttggtaatagacgaagctcat
tgcctatcccaatggggacatgattttaggcctgattatcttaatatcaaggatttttat
caaaatcttaattaccgcccgacaattctggctttaactgcgactgccactcccatggta
caacaggatatactgcactatctggatattccaagagcgaaattaattaatagcggtagt
gatcgccctaacctttatatggaaattataagagtagataaagaaaaagataagctgcct
gctttgagagaaacattaaaaaaccagagagataacggtattatctatgcggctaccaga
aaggacagtgaatggttgtcagtttggctggcgcgtcatttggggataaaaacagcctgt
tatcatgcgggattgaataaagatgagcgcagcagagtgcaggaggattttttagggggt
aaaataaataccgttgtggctacaaatgcttttggaatgggtattgataaacccaatatc
aggtttgttattcactattgtctgccggcttctttagaggcttattatcaggagattgga
cgcgcgggaagagataatctgccctcccgctgtacgctgatttatgcagctaaagacaag
caattacaggagtggattattgataacgatgttataaaaagagatgatctagtggttttc
tggcgtgctttgaaggaatatatgcaaaacggtacatctgtaatacctatataccatttg
gaagaacataatctcaatgaaacaaaacagcgcctgctggtaagcatgttggaaagaaga
caattgattaagctggcggacaaagaccaggataatttaattctggaagcaggcgtggtt
aaagctacaccggatataatgaaagaggttatggcagaggcagaagagagaataaatttc
cgtaaagaaaaattaaatgctgtagttaattggataaacggcagcagctgccgcagagag
atacttttaaattattttggtgagcaaaaacaatttaagcatgataattgttgtgatgca
tgcgatagagcaaaacggctgaatcttgtcgagtctactttgcctatcgaagttttaaaa
tgtgttaagatattaacccgtaatgttgggcgttctaaactggccgatattttaaaagga
tctaaagcaaaagatattattagcttttcttatgataaagtcccttgttatggtcaaatg
tcttcctttaaccggaacaaaataatgagattgattgatagtttgttgggtgacggttat
ttaatgcagcaaggcagtgaatacccggttttaatgttaactgaaaagggtaaaaatgct
ttagagaataaaaaaaccttacctgtatgggaggatgcggcaccgcagcaggagaaaacg
gcaggactgattgacgatacagggatgaaaataatttcagagttgaaaaattaccggttg
aagttgtctcagcaggagcaaaaaccaccttatgtctatttccatgaccgtgtgttggag
gaaattgctcttatgcagccttccagcaatgctcaattattattaattaatggtatgggt
gagaaaaaggttgctgctcatgggcaagatattttaaatatagttgctaaatatacagga
acggatcagcaggctaatattgattcgactgctacaaaagagatattgcttaataaagta
aaagaactttgccggagtggttatagtattgaaaatatagctcaggaaacaggcagagct
gtatccactgtagagacttatcttgaacaactggtcagtgagggaaaactggaattggct
gagctattgtcctgggaagtcagaaagcagatttacctggtaatagaaaaattcggatta
atgtctcagcttaaaataataaaagataatctgccggaagatatatcttatcactatata
aagcttgtacgctcagctttgttaagaagatatgaagtataa

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