Desulfofarcimen acetoxidans: Dtox_2289
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Entry
Dtox_2289 CDS
T00986
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
dae
Desulfofarcimen acetoxidans
Pathway
dae03410
Base excision repair
dae03430
Mismatch repair
dae03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
dae00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Dtox_2289
03430 Mismatch repair
Dtox_2289
03440 Homologous recombination
Dtox_2289
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dae03400
]
Dtox_2289
DNA repair and recombination proteins [BR:
dae03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Dtox_2289
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Dtox_2289
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Dtox_2289
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Helicase_C
Motif
Other DBs
NCBI-ProteinID:
ACV63103
UniProt:
C8VZX5
LinkDB
All DBs
Position
complement(2456989..2459712)
Genome browser
AA seq
907 aa
AA seq
DB search
MQKQKIWHIKENDLATQSIITKELGVSPILAQLMVNRGLGTVEQIKNFMEYDLSSLNNPY
ILQDMQKAVNRIIEAVNRSEKILIYGDYDVDGITGTALLVGALRRLTDHVNYYIPHRIKE
GYGLHKEAVEKAAGQGYSLIITVDCGISGKEAVDWSVQNTKTDIIITDHHEPPPVLPAAL
AVINPKRKDCEYPFKELAGIGVALKLVQAVYAAANMSSETWKEYLDIVCLGTIADVVPLL
GENRILVKYGLPYLTKTSKKGLIALIKASGLRGDITSGQVGFVLAPRLNAAGRLGDPFMA
VELLLTEDEAQANQIAVVLDEKNRKRKSVEDAALKEAIQMIEREISFKQSKVLVLASEEW
HPGVIGLVASRLVERYYKPVLAIALDGEQGKGSARSIPGFNLYQALEHCGKNLSGYGGHT
MAAGFSLKRESLDNFIREINVYADEVISEDLLVPVMNLDGIFSLNDITEQVIAEIEKLAP
FGQANPGPLLCCPEIQVVNFKGVGKEGEHLKIKIRKENGFIDGIGFNLASYSEMLATAER
VNLAFVPEINEWQGKRHISLRIKDIQADTNIYRDSTGSQSINFTLAQEANCSTKNTYLMF
QPEYILQEIIEYNTSNQIFLPDLSGRLIFPDANLQISLSPDTIITDKRNSSERINRLLAT
EFAKLTLIMVGCGYQTVELSRFLMKSRPDLKNRVRFLHLSMREEEINMVINDLYAGKILV
LVTTLQSASGLKLSDLNKIMLFHLPFTRKEWGLLCYLLKNIAVSVQLDLVFGRHDRGINQ
QRLDSVMPFRNNLANLFSYLRQVITKAGKPTIELNLAAIVNNLNNNKLVRLSNFMIQLGM
NVFKEIGLLEYQREGSNYQVKLLPTPKEKFNLPESVTYNRWQNIWEETKLFSQLLLKTPS
EDFYYKL
NT seq
2724 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaaacaaaaaatttggcatatcaaggaaaacgacttagctacccagtccataata
accaaggaattaggcgtttcacctattttagcgcaattaatggttaatcgtggtttaggc
actgttgagcaaattaaaaactttatggagtatgatttatccagtttaaataatccatat
attttgcaagatatgcagaaagctgtaaacagaattattgaagcagtaaacaggagcgaa
aaaatacttatctacggtgattatgatgttgacggcataacaggaacagctttattggtt
ggcgcgctcaggagattaaccgatcatgtgaactattatataccgcaccgtataaaggaa
ggttacggcctgcacaaggaagctgtggaaaaagctgctgggcagggttactctttaatt
attacggttgattgtggtataagcggtaaagaagcggtagattggtctgtgcaaaacact
aaaacagatataattattactgatcatcatgaaccgccgcctgttttgccagccgcgtta
gcggtaataaatcctaagaggaaggactgcgagtacccttttaaagaactggctggaatt
ggagtagcattaaagcttgtgcaggctgtatatgcagcagccaatatgagtagtgagaca
tggaaggaatatttggatatagtttgtctgggtacaattgccgatgttgtgcctctgctg
ggagaaaaccggattttagttaaatacggtttaccctatctcaccaaaacatccaaaaaa
ggcttaatagcgttgattaaggcatcgggattgcgaggcgatattacctcgggccaggtt
gggtttgttttagctcccagattaaatgccgccgggcgtctgggggaccctttcatggca
gtagaacttcttctcaccgaagatgaagctcaggcaaatcagattgcagttgttttggac
gagaagaaccgtaagcgcaaaagtgtggaagatgctgcacttaaagaagctatacaaatg
attgaacgggaaataagttttaaacagagtaaagttttggtattggcttctgaggaatgg
cacccgggggttatcggtttggtagcatcacgtttggtggaacgttattacaagccggta
ttggctattgctttagacggggaacagggtaaaggttctgccaggagcattcccggtttt
aacttatatcaggctcttgagcattgcggaaagaatctttcaggatatggcggacacacc
atggcagccggattttctcttaaaagagagtctctggataattttattagagaaataaat
gtttatgctgatgaagttataagtgaggatttattggttcctgttatgaatctggacggt
atattttcacttaacgatataactgaacaggttatcgctgaaatagaaaagctggcgcct
tttggccaggctaatcccgggcccttgctatgctgcccggaaatacaggtagttaacttt
aagggggtgggaaaggaaggggaacacctaaaaattaaaatacgcaaggaaaacggcttt
attgacggcataggctttaatctggcctcttattcggaaatgctggcaacagctgagaga
gtaaatctggcctttgtaccggaaattaatgagtggcaaggcaaacgtcatataagtttg
cgtataaaggatattcaggcggacacaaacatatatcgagatagtaccggcagtcaatca
ataaattttaccctggctcaagaggcaaattgttcaactaaaaatacttacttgatgttt
caacctgagtatatcttacaggaaataattgaatataatacaagtaatcaaatattttta
ccggaccttagcgggcgattaatttttcctgatgcaaatttgcagataagtttatcccct
gatacaataatcactgataaaaggaattcttctgaacgaattaaccgtttgcttgcaact
gaatttgccaaattaactttaataatggttggctgtggttatcaaacagttgaattgagc
cggtttttaatgaagtcaagacctgatttaaagaatcgggtaagatttttgcacctgtcc
atgcgggaagaagagattaacatggtcattaatgatctgtacgcggggaaaatactcgtg
cttgttactactctgcaatcagccagtggactaaagctaagcgatctaaataaaataatg
ctgtttcacttgccttttacacgcaaggaatggggattgctttgctatttgttaaaaaat
attgctgtttctgttcaacttgatttagtatttggccggcatgaccgggggatcaatcaa
caaaggctggattctgtcatgccttttcgcaataatttagccaacttgttttcatacctg
aggcaagtaattacaaaagccggcaagccaaccatagaattaaatctggcagcaattgtt
aataacttaaataataacaaattagtgcgcttatccaatttcatgattcaattaggtatg
aatgtttttaaggaaatcggtctgctggaataccagagagaaggttcaaattatcaagtt
aagctgctgcccacaccaaaggaaaaattcaacctgccggaatcagtcacttataacagg
tggcagaatatttgggaggaaacaaaactattttcacagttgctgttaaaaacaccgtca
gaggacttctattataaattataa
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