Desulfofarcimen acetoxidans: Dtox_3020
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Entry
Dtox_3020 CDS
T00986
Name
(GenBank) AAA family ATPase, CDC48 subfamily
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
dae
Desulfofarcimen acetoxidans
Pathway
dae04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
dae00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
Dtox_3020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dae03019
]
Dtox_3020
03009 Ribosome biogenesis [BR:
dae03009
]
Dtox_3020
04131 Membrane trafficking [BR:
dae04131
]
Dtox_3020
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
dae04147
]
Dtox_3020
Messenger RNA biogenesis [BR:
dae03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
Dtox_3020
Ribosome biogenesis [BR:
dae03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
Dtox_3020
Membrane trafficking [BR:
dae04131
]
SNARE
SNARE associated proteins
Others
Dtox_3020
Autophagy
Aggrephagy
Other aggrephagy associated proteins
Dtox_3020
Exosome [BR:
dae04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
Dtox_3020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
AAA_16
RuvB_N
AAA_5
AAA_22
TIP49
AAA_2
AAA_33
CDC48_2
AAA_14
NPHP3_N
AAA_28
nSTAND3
RNA_helicase
IstB_IS21
Mg_chelatase
Zeta_toxin
Parvo_NS1
AAA_18
AAA_17
AAA_7
SLFN-g3_helicase
TsaE
AAA_3
Sigma54_activat
DUF815
ABC_tran
AAA_24
AAA_19
ATPase
AAA_25
NACHT
AAA_30
AAA_lid_PRS2_C
bpMoxR
Motif
Other DBs
NCBI-ProteinID:
ACV63772
UniProt:
C8W3I6
LinkDB
All DBs
Position
complement(3219212..3221341)
Genome browser
AA seq
709 aa
AA seq
DB search
MGDGITLKISEALTRDVGRCIARIDPEYFERIAVEIGDIIQLKGQRVTVVRVMPTFTAER
YKGIIQIDGITRENVQSGLGEKIEISKINLGFADSITITPLNKNFRMLEKNIGYLSSLLD
GKPVIAGDRVRVNLFGASAQDFRVLETKPERAVVLRDSTKISIKHNDNSEKKSGHKISYE
DIGGLEQEVQRIREMIELPLRFPQLFEHLGIDPPKGVLLYGPPGTGKTLIARAVAEETDA
HFIHVNGPEIIAKFYGESEAKLRNIFERAAQNAPSIIFLDELDGIAPKRTEVTGDVEKRV
VAQFLALMDGLEARREIIVIGATNIPDALDPALRRPGRFDREIKIGVPNKKGRLKILQIH
TRGMPLADDVELTRLAEITHGFVGADLTALCREAAMSTLRSVLPQIDFSQVELPYQLLQC
LEIKMEHFLQAYSEIEPSAIREVFVENPNIHWTDIGGLDRIKQTLIETIEWPLKYEQLYK
KTGLTPPKGIILYGSPGTGKTLLAKAIATECNANFISIKGPALLSKWVGESEKGVREVFK
KARQVSPCVIFFDELDSLAPRRQSGGEGSAVMDRVVSQLLTEIDGVEELRGVIAVAATNR
IDIIDEALLRPGRFDILLEIPLPDKKGREEIFITHTKGCTLNSCVNFVELASLTEDMSGA
DIELVCKNAMLYLIRECIRSGIKDDTKLELRKEHFMNAIRHHRQNTASY
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atgggagacggaataactttaaagatttccgaggccttaaccagggacgtggggagatgt
attgccaggattgatcctgagtattttgaaagaattgctgtggaaatcggggatattatt
caattaaaggggcagcgcgtgactgtggtaagggtgatgccgacatttacagcggaacgt
tataaaggaataattcagattgacggtattaccagggagaatgtgcaaagcgggctggga
gaaaaaatcgagattagtaaaataaatcttggctttgcggatagtattaccattacgccg
cttaataaaaattttagaatgcttgaaaagaatatcggctatttaagcagtttgttggac
ggaaaaccggtgatagccggtgatcgggtccgggttaatctttttggtgccagcgctcag
gacttcagggtattggaaaccaagccggagagggcagtagttctgcgtgactctaccaaa
attagtattaagcacaatgataatagtgaaaagaaaagtggtcacaaaatatcttatgaa
gatatcggtggattggaacaggaagttcagcggatacgtgaaatgattgagttgccctta
agatttcctcaattgtttgaacatttgggtattgacccgcccaagggtgttcttttatac
ggtcctcccggtaccggaaaaactttaatcgccagggcagtggcggaggagacggatgca
cattttattcatgttaatggcccggagattattgctaaattttatggagaaagtgaagca
aagttacgaaatatttttgaacgcgcagctcaaaacgcgcctagtattatttttttagat
gaattggatggaattgccccgaaaagaactgaggtaaccggggatgtggaaaaaagagta
gtagcccagtttttagctttgatggacggattggaagcgcgccgtgaaataattgttatc
ggcgcaacgaacattccggatgcactggatcccgccttgaggcgtccgggccgctttgat
cgggaaataaaaatcggagtaccgaataaaaaaggaagattaaaaatacttcagatccat
accagaggtatgcctctggcggatgatgtagaattaacgaggttggccgagattactcac
ggttttgtaggagctgatttgactgctttatgcagggaagcagctatgtcaaccttgcgt
tccgtattgccgcagattgatttttctcaggttgaattaccttatcagctgcttcagtgt
ttagagatcaaaatggagcattttctgcaggcttattcggaaatagagccttccgctatt
cgggaggtgtttgttgagaatcccaatattcattggacggatataggggggcttgaccgg
atcaaacaaacacttatagagaccattgagtggcccttaaaatacgagcaactatacaaa
aagaccggtcttactccacctaagggaattattttgtatggttctccgggtaccggtaaa
acactgcttgcaaaggcaattgccacagagtgtaatgctaatttcatatccataaaagga
ccggcgcttttgtctaaatgggttggtgaatcggaaaagggtgtcagggaagtatttaaa
aaagccaggcaagtcagcccttgtgtcatattttttgatgaattggattcgctggctcca
agacggcagtctggcggcgaaggttcggcagtgatggacagagtggtaagtcaactgttg
accgaaattgatggtgtggaagaactgcgaggggtaatcgcagttgcagccaccaatcga
atagatattattgatgaggcactgcttcgtccgggaagatttgatatattgctggaaata
cctttacccgataaaaaaggtcgggaagaaatttttattacccatacaaagggctgtact
cttaattcgtgtgtgaattttgttgaattagcttctcttacagaagatatgtccggggcc
gatatcgaattggtatgtaaaaatgccatgctgtatttaattagggagtgtatacgcagc
ggcataaaagacgataccaaattagaattaagaaaagaacattttatgaatgctataagg
caccatcgtcaaaatacagcttcttattag
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