Desulfofarcimen acetoxidans: Dtox_3101
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Entry
Dtox_3101 CDS
T00986
Name
(GenBank) RNA binding metal dependent phosphohydrolase
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
dae
Desulfofarcimen acetoxidans
Pathway
dae03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dae00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Dtox_3101
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dae03019
]
Dtox_3101
Messenger RNA biogenesis [BR:
dae03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Dtox_3101
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
FUT8_N_cat
DUF489
Motif
Other DBs
NCBI-ProteinID:
ACV63853
UniProt:
C8W3R7
LinkDB
All DBs
Position
complement(3297014..3298549)
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AA seq
511 aa
AA seq
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MFENLLIALPAAVVAFIIGYFIRRYVVEAKIATAEEEVKRIIDNAEKTAESLKREAILEA
KEEVLKQRNEVERENKERRSELQRLERRLVQKEETLDRKTEAIEKKEDSLIKKENEIDIV
KTEIGEIYNRQLSELERISGMTSEEARQILLSDIEKEMKHEAAILIKDIETKAKEEGEKR
ARAIISLAIQRCAADHVAETTVAVIPLPNDEMKGRIIGREGRNIRAFETLTGIDLIIDDT
PEAVILSGFDPIRRETARIALEKLIVDGRIHPARIEEMVEKARKEVDFQIRDAGEQSTFD
TGVHGIHPELINLLGRLKFRTSYGQNVLKHSIEVAHLAGMMASELGVDVKLAKRAGLLHD
IGKAMDHEVEGPHVTIGVDLAKKYRESQEVIHAIASHHGDEEPKTIIAVLVQAADAISAA
RPGARRETLESYIKRLHKLEEIANSFEGVEKSFAIQAGREIRIMVHPDKVDDLGAVRLVR
DITKQIENDLDYPGQIKVVIIRETRVIDYAK
NT seq
1536 nt
NT seq
+upstream
nt +downstream
nt
ttgtttgagaatcttttaatcgcattaccggcagctgttgttgcctttattattggttat
tttatcagaaggtatgtggttgaagcaaaaatagccactgcggaagaagaagtaaaaaga
attattgataacgcggaaaaaactgcagagtccttaaaaagggaagctattttggaagcc
aaggaagaagttttaaagcagcgcaatgaggtagagcgggaaaataaggaacgccggtcc
gaattgcagcggctggagcgcaggctggttcaaaaagaagaaaccctggatcgaaaaacc
gaagccattgagaaaaaggaagattccttaatcaagaaagaaaacgaaattgatattgtc
aagacagaaataggtgaaatttataatcgtcaactaagtgaattagaaagaatttctggt
atgacttctgaggaagcccgtcagatcttgctgtccgatattgaaaaggaaatgaaacat
gaagccgccatattgattaaagatattgaaactaaggctaaagaagaaggtgagaaaagg
gcgcgggctattatctcactggctattcaaagatgtgcggcagatcatgtggccgaaact
actgtagcggtaattcctttacccaatgatgaaatgaaaggccgtattatcggtcgtgaa
ggtcgcaatatccgggcctttgagacacttacaggcatagacttgatcatagacgataca
cctgaagcggtaatattatcaggttttgacccgattagaagagaaactgccaggattgct
ttggagaaactaatagttgatggcaggatacacccggccaggattgaggagatggttgaa
aaggctcgcaaggaagtggacttccaaatacgtgacgccggtgagcaatctacctttgat
accggagtgcatggtattcatcctgaacttattaacctgctgggcaggcttaaatttaga
accagttatggacaaaatgttttaaaacactctattgaagttgcccacctggcaggcatg
atggcttctgaactgggtgtggacgtaaaattggctaagagagccggtttgctgcatgat
ataggaaaagctatggatcatgaagtggagggtccccatgtaaccattggtgttgatttg
gccaagaaataccgtgaaagccaggaagttatacatgctattgcttcccaccacggtgat
gaggaacctaaaaccattattgccgtactggtacaggcggcagatgctatttccgcagcc
agaccgggagccaggcgtgaaactctggagtcctatattaagcgcttgcacaagttagag
gaaatagccaattcatttgaaggcgttgaaaaatcttttgctattcaagccggccgtgaa
attcgtattatggttcatccggacaaggttgatgatctgggtgctgtgcgcctggtgcgt
gatattacaaaacaaatcgaaaatgatctggattacccgggacagattaaagtggttata
atcagggagactcgtgtaattgattatgccaagtaa
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