Desulfofarcimen acetoxidans: Dtox_3180
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Entry
Dtox_3180 CDS
T00986
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
dae
Desulfofarcimen acetoxidans
Pathway
dae03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dae00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Dtox_3180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dae03019
]
Dtox_3180
03016 Transfer RNA biogenesis [BR:
dae03016
]
Dtox_3180
Enzymes [BR:
dae01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
Dtox_3180
Messenger RNA biogenesis [BR:
dae03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Dtox_3180
Transfer RNA biogenesis [BR:
dae03016
]
Prokaryotic type
tRNA degradation factors
Dtox_3180
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
KH_1
S1
KH-I_KHDC4-BBP
KH_2
tRNA_bind_2
OB_RRP5_4th
Motif
Other DBs
NCBI-ProteinID:
ACV63922
UniProt:
C8W4N6
LinkDB
All DBs
Position
complement(3379963..3382203)
Genome browser
AA seq
746 aa
AA seq
DB search
MSILKKELNIGGRVLTIETGRVAKQAGGAVLVAYGDTVVLSTATMSRTLREGIDFFPLTV
EYEERLYAVGRIPGGFIKREARPSENAILSCRLIDRSIRPLFPKGFRNETQIINTIMSVD
QDHAPEMAAMIGTSAALTISDAPFNGPIGGVIVGRVDGELIINPNAAQSAKSDLHLVVAG
TKDAVMMVEAGANEVTEEVMLDAIAYGHDVIRQIVDFIDEFRQEAIEQQLAKPKLEFAAP
EENQELIEAIGETMEAEIKMAVRKCVEERMDKKTREAFFDELKDRLVLEFAEQYPEQVSD
IKDLFRKIEKKLVRQLIVKDRIRMDGRALDEVRPISVEAGVLPRTHGSGLFTRGQTQILS
VVTLGAISEEQILDGLGTEESKRYMHHYNFPPFSTGETKMMRSPGRREIGHGALAGRALE
PMIPGEEEFPYTIRVVSEALESNGSTSMGSVCGSTLALMDAGVPIKAPVSGVAMGLIKED
DEIVVLTDIQGLEDALGDMDFKVAGTAKGINALQMDIKVAGVTQEILEKALQQAYTGRMH
IMGKMMEVISAPRQELSKYAPMIIHTTINPDKIRDVIGPGGKTIKKIVEETGANIDIEDD
GRVFVAAVDREAGQKALSIIEKLTQEVVIGQIYLGRVVKIMDFGCFVEIIPGVLGLPGKE
GLVHISQLAHQRVNKVEDVVAEGDMILVKAIGNDNMGRLKLSKKEAMPQEGKEAEAQSSE
NGSKEENGSRESRHRRGGARPPRKTV
NT seq
2241 nt
NT seq
+upstream
nt +downstream
nt
atgtcaattttaaagaaagaattaaacataggcggccgggtgttaactattgaaaccggt
agagtagccaagcaggcgggtggcgcggttctggttgcctatggtgatacagtagtatta
tctacggctaccatgtccaggactctgagagagggtattgattttttccccttgacggtg
gagtatgaggaaagactttatgccgtaggaagaatccccgggggttttattaagagggaa
gcccgtcccagcgaaaatgccatattgtcttgccgtttgatcgacagatctatacgacct
ttattccccaagggttttcgcaatgagacgcagattatcaataccattatgtcggtcgat
caggaccacgcgccggaaatggcggcaatgatcggaacctcggcagccttgaccatatct
gatgctccttttaacggtcctattggcggggttattgtcggcagggtagacggtgaatta
attatcaaccccaatgcagcccagtcggcaaagagtgatctgcacctggtggtggcaggt
accaaggacgcggtgatgatggtggaagcaggggctaatgaagtaactgaggaagtaatg
ctggatgctatcgcctacggtcacgatgtcattcgtcaaatcgttgattttatagatgag
ttcaggcaggaagcgattgagcagcagttggccaagcccaagctggaatttgcagctccc
gaagagaatcaggaacttatcgaggctatcggcgaaactatggaagcggaaataaaaatg
gctgtgcgcaaatgtgttgaagaacgtatggataagaaaacacgggaagctttttttgat
gagttgaaggacaggctggttctggaatttgctgagcagtatcctgagcaggtgtcagat
ataaaagacttgtttaggaaaattgagaaaaagctggtgcggcagttaatcgttaaggat
cgcatcagaatggatggtcgggcgctggatgaggttaggcctatttctgtggaggccggt
gttttgcctcgtacgcatggttcaggtttatttaccaggggtcagacacagattttgtct
gtggttacgctgggtgccatatctgaggagcagattctggacggtttgggaacagaagaa
tctaagcgctacatgcaccactacaattttcctccttttagtaccggtgaaaccaagatg
atgcgttcgccgggccgcagggaaatcggtcatggtgctctggccggacgtgctctggaa
cctatgattcccggtgaggaagagtttccttatactattcgcgtggtttctgaagctctg
gaatctaacggttcgacttccatgggcagtgtctgcggcagcacgcttgctttaatggat
gcaggtgttccgattaaagctcccgtgtccggtgtagccatgggtttaatcaaagaggac
gatgagattgtcgtgctcactgacattcaaggcctggaagacgctctgggcgatatggac
tttaaagttgccggtacggcgaaaggcatcaatgcgctgcagatggatattaaagtggca
ggggttacccaggaaattctggaaaaggctttgcagcaggcttataccggcaggatgcac
atcatgggtaaaatgatggaagttatctctgccccgcgccaggaattgtccaaatacgcg
cccatgattattcatactacgattaatcctgacaagatcagggatgtaattggtcccggc
ggcaagacaataaagaaaattgttgaggaaaccggtgccaatatagatatagaagatgac
ggcagggtatttgtagcagctgtagatcgtgaagcagggcagaaagctctgagtattatt
gaaaagttgacacaggaagttgtcatcggtcagatttatctgggccgggtagtcaaaata
atggatttcggctgttttgtggaaattattcctggagtgctgggcctgccgggtaaggaa
ggtctggtgcatatatctcaactggcgcaccagagggtaaataaagttgaggatgtagta
gctgaaggtgatatgattctggttaaggctattggcaatgataatatgggacgtctcaag
ctttctaaaaaagaagcgatgccccaggaaggcaaggaagcggaagcccagagcagtgag
aacggcagtaaagaggaaaacggcagcagggaaagccgtcacaggagaggcggagcccgt
cctcctcgtaaaacagtataa
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