Diaphorobacter aerolatus: H9K75_17915
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Entry
H9K75_17915 CDS
T06773
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
daer
Diaphorobacter aerolatus
Pathway
daer03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
daer00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H9K75_17915
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
daer03019
]
H9K75_17915
03009 Ribosome biogenesis [BR:
daer03009
]
H9K75_17915
Enzymes [BR:
daer01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
H9K75_17915
Messenger RNA biogenesis [BR:
daer03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
H9K75_17915
Ribosome biogenesis [BR:
daer03009
]
Prokaryotic type
rRNA processing factors
H9K75_17915
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Anti-TRAP
dnstrm_HI1420
Motif
Other DBs
NCBI-ProteinID:
QNP47964
UniProt:
A0A7H0GI48
LinkDB
All DBs
Position
complement(3858105..3861254)
Genome browser
AA seq
1049 aa
AA seq
DB search
MKRMLINATQPEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDY
GEDRHGFLPFKEISKQYFAEGVSPSQAKIQDVIREGQELIVQVEKEERGNKGAALTTFIS
LAGRYVVLMPNNPRGGGVSRRIEGEDRAELKEAMDQLEYPKGMSIIARTAGIGRTAPELQ
WDLNYLLKLWNAVDGAAKSGRGAFLIYQESSLVIRAIRDYFNGDIGDILIDTDDIFEQAH
QFMAHVMPEHANKVKRYRDDAPLFSRFQIEHQIESAYSRTVTLPSGGAVVIDHTEALVSV
DVNSARAIKGGDIEETATRTNLEAADEVARQMRLRDLGGLIVIDFIDMEESKNRREVENR
LRDALRQDRARVQFGSISKFGLMEMSRQRLKPALSEGAHINCPRCGGSGHIRDTESSALQ
ILRIIQEESMKDNTAAVHCQVPVEVASFLLNEKRTEIAKIELKQRVNVLMIPNKSLETPH
YKLERLKHDDPRLEDLQSSYQLAEEVEDQTKVTRRSQEPTNKQTPVIKGVLPDAPAPQVE
PRPDAAARAAARTAGQQQPRAGAAAPAPAPTPAPAPAAAAPVRPQEMGFIAWIKSVLGFG
PAPAPAPVPAPVAAPATAPAGETREPRREGREGGRNNNDRRRGGERNGNRDGNRNEAANG
ESRGEGRSGRRNERNDRNGEPRQPREGGEGRNDGRRGERSEGENNRRDARGGRDRNNNNG
NEQRNANSIPVVDASAPAGVQPDDASAMGNDRPRRERGDRGPRRERGERAPRTIDANATA
PSAEAQALLPMPNIDLSLPNDGAEADAGVNADGTQATSTAFDGERRERRSRDRYGRDRRG
RNNTGAEAGQDAGAPTQDADTQQAVIALPAEPAQTNDMGEEPARRSYFSQTTTAVAAAVA
VVEPVVQAAPAPQAPVPAPEVATPATIVVSPSAEAIVVPVEKPVAAATSAPVVADAGMPR
VGSYALPLQSLSELAQASGLQWVNSDADKIAAVQAAIAAEPKPVHVPRERPAAVVIDEGP
LVLVETRRDLSELRLPFDIDQQQQQQQQQ
NT seq
3150 nt
NT seq
+upstream
nt +downstream
nt
atgaaacggatgctcatcaacgccacgcagcctgaagaacgccgcctggccatcgtcgac
ggccagaagctgctggactacgaaatcgaaatcgagggacgcgaacaacgcaagggcaac
atctacaaggcggtcgtgacgcgcgtggaaccgtcgctcgaagcctgcttcgtggactac
ggcgaagaccgtcacggcttcctgcccttcaaggaaatctccaagcaatatttcgccgaa
ggcgtatcgcccagccaggccaagatccaggacgtgatcagggaaggccaggaactcatc
gttcaggttgaaaaggaagagcgcggcaacaagggcgcggcgctcaccacgttcatctcg
ctggctggccgctatgtcgtgctgatgcccaacaacccgcgcggcggtggcgtttcacgc
cgcatcgagggcgaggaccgcgctgaactcaaggaggcgatggaccagcttgagtatccc
aagggcatgtcgatcatcgcgcgcaccgccggcatcggccgcaccgcgcccgaactgcag
tgggacctgaactatctgctcaagctgtggaacgccgtggacggcgcagccaagtcgggc
cgtggcgcgttcctgatctatcaggaatcgagcctcgtgatccgcgcgatccgcgactat
ttcaatggcgacatcggcgacatcctgatcgataccgacgacatcttcgagcaggcgcac
cagttcatggcgcacgtgatgcccgagcatgcgaacaaggtcaagcgctaccgtgacgat
gcgccgctgttcagccgcttccagatcgagcaccagatcgaatcggcgtattcgcgcacc
gtgaccctgccctcgggcggcgccgtggtcatcgaccacaccgaagcgctggtctccgtg
gacgtgaactcggcccgcgccatcaaaggcggcgacatcgaggaaaccgccacccgcacc
aatctcgaagccgccgacgaagtggcccgccagatgcgcctgcgcgatctcggtggcctg
atcgtcatcgacttcatcgacatggaagagtcgaagaaccgccgcgaggtcgaaaaccgc
ctgcgcgacgcgctgcgccaggaccgtgcgcgcgtgcaattcggctcgatcagcaagttc
ggcctgatggagatgagccgccagcgcctgaagcctgcgctctccgaaggcgcgcacatc
aactgcccgcgttgcggcggctccggccacatccgcgacacggaaagctcggcgctgcag
atcctgcgcatcatccaggaagagtccatgaaggacaacaccgccgccgtgcactgccag
gtgccggtggaagtggcctcgttcctgctcaacgaaaagcgcaccgaaatcgccaagatt
gaactcaagcagcgcgtgaacgtgctgatgattccgaacaagtcgcttgaaacgccgcac
tacaagctcgaacgcctgaagcacgacgatccgcgcctcgaagacctgcaatccagctac
cagctcgccgaagaggtggaagaccagaccaaggtgacgcgtcgctcgcaggagccgacc
aacaagcagaccccggtgatcaagggtgtgctgcccgatgcaccggccccgcaggtcgag
cctcgtcccgatgcggccgcgcgcgccgctgcccgcacggcaggtcagcagcagccacgc
gctggcgcagccgcaccggctcccgcgcccacaccggcacccgctcccgcagcagcagcg
cctgtacgtccgcaggaaatgggcttcatcgcctggatcaagagcgtgctcggctttgga
ccggcaccggcgcccgcgcccgtgccggctcccgtcgccgcaccagccacggcccctgcc
ggagaaacccgcgagccgcgccgcgaaggtcgcgaaggcggtcgtaacaacaacgaccgt
cgtcgcggcggtgagcgcaacggaaaccgtgacggcaatcgcaacgaagctgccaacggc
gagtcgcgtggcgagggccggagtggccgacgcaacgaacgcaatgaccgcaacggcgag
ccccgccagccacgcgaaggcggcgaaggccgcaacgatggccgccgtggcgagcgttcg
gaaggcgagaacaaccgtcgcgatgcgcgcggcggtcgtgatcgcaataacaacaacggc
aatgagcagcgcaacgcgaacagcatccccgtcgtggacgcctcggctccggccggtgtg
cagccggacgatgcatccgcgatgggcaatgatcgtccgcgccgtgagcgtggtgatcgc
ggcccgcgccgtgaacgtggtgagcgcgccccgcgcaccatcgacgccaacgcaacggct
ccgtccgccgaggcgcaggccttgctgcccatgcccaatatcgatctgtcgctgcccaat
gacggcgccgaggccgatgcaggcgtgaacgcagacggcacgcaggcaaccagcaccgcc
tttgacggcgaacgccgcgagcgccgctcacgtgaccgctatggccgtgatcgccggggt
cgcaacaacaccggtgcggaagcaggccaggacgcaggtgcgccgacgcaggatgccgat
acccagcaggcggtcatcgccctgcccgcggaaccggcacagaccaacgatatgggcgaa
gagcccgcgcgccgcagctacttctcgcagacgaccaccgcagtcgctgcggcggtagcc
gtcgtcgagcccgtggtgcaggccgcgccagcacctcaggcaccggtcccggcacctgag
gtcgcaacacccgccaccatcgtggtgtcgccgtcggcagaagccatcgtcgtgccggtc
gagaagcccgtggcggctgcgacctccgcgccggtagtggccgacgccggcatgccgcgt
gtgggcagctacgctctgccgctgcaatcgctgagcgaactcgcccaggcatcgggcctg
cagtgggtgaattccgacgccgataagatcgctgccgtgcaggccgccattgccgccgag
cccaagccggtccatgtgccgcgcgagcgtcctgcggccgtggtgatcgacgaaggcccg
ctggtgctggtcgaaacgcgccgcgatctgagtgagctgcgcctgccgttcgatatcgat
cagcagcaacaacaacagcagcagcaataa
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