KEGG   Danio aesculapii (panther danio): 130215874
Entry
130215874         CDS       T11734                                 
Name
(RefSeq) DNA-directed RNA polymerases I, II, and III subunit RPABC1-like
  KO
K03013  DNA-directed RNA polymerases I, II, and III subunit RPABC1
Organism
daes  Danio aesculapii (panther danio)
Pathway
daes03020  RNA polymerase
daes03420  Nucleotide excision repair
daes04623  Cytosolic DNA-sensing pathway
Brite
KEGG Orthology (KO) [BR:daes00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    130215874
  09124 Replication and repair
   03420 Nucleotide excision repair
    130215874
 09150 Organismal Systems
  09151 Immune system
   04623 Cytosolic DNA-sensing pathway
    130215874
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:daes03021]
    130215874
   03400 DNA repair and recombination proteins [BR:daes03400]
    130215874
Transcription machinery [BR:daes03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     130215874
  RNA polymerase III system
   RNA polymerase III
     130215874
  RNA polymerase I system
   RNA polymerase I
     130215874
DNA repair and recombination proteins [BR:daes03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      130215874
SSDB
Motif
Pfam: RNA_pol_Rpb5_C RNA_pol_Rpb5_N NYD-SP12_N DUF7890
Other DBs
NCBI-GeneID: 130215874
NCBI-ProteinID: XP_056303702
LinkDB
Position
22:18247581..18250692
AA seq 210 aa
MDDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFRSQFGDKPSEGRPRRNDLTV
LVAHNDDPTDQMFVFFPRNQRLALKTIKMYCQRMQEENITRAIIVVQMGMTPSAKQSLVD
MAPKYILEQFLQQELLINITEHELVPEHIVMTKEEVTELLARYKLKESQLPRIQAGDPVA
RYFGLKRGQVVKIIRPSETAGRYITYRLVQ
NT seq 633 nt   +upstreamnt  +downstreamnt
atggatgacgaggaagagacatacagactatggaaaattagaaaaactataatgcagctt
tgtcatgatcgcggatatttggtgacgcaagatgaattggaccagactcttgatgaattc
aggagccagtttggagataaaccgagcgagggtcgaccacgacgaaatgacctgacagtc
ctggtggcccacaatgacgacccgaccgaccagatgtttgtgttcttcccgaggaaccaa
aggttggcattaaaaaccataaagatgtattgccagcgcatgcaggaggaaaacatcacc
cgcgccatcattgtagtacaaatgggcatgacaccctccgccaaacagtctctggtagac
atggcgccgaagtacatacttgagcagtttcttcagcaggagcttctaatcaacattact
gaacacgagcttgttccagagcacatagttatgacaaaagaagaagtgactgagttgctg
gcgcggtataagctaaaggaaagccaacttcccagaattcaagctggggatcccgttgcc
cgttactttggcttgaagagaggccaggtcgttaagatcatcagacctagtgaaactgct
ggacggtacatcacatacagattggtccagtaa

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