Danio aesculapii (panther danio): 130216218
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Entry
130216218 CDS
T11734
Symbol
smarcd1
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
daes Danio aesculapii (panther danio)
Pathway
daes03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
daes00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
130216218 (smarcd1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
daes03021
]
130216218 (smarcd1)
03036 Chromosome and associated proteins [BR:
daes03036
]
130216218 (smarcd1)
Transcription machinery [BR:
daes03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
130216218 (smarcd1)
Chromosome and associated proteins [BR:
daes03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
130216218 (smarcd1)
PBAF complex
130216218 (smarcd1)
GBAF(ncBAF) complex
130216218 (smarcd1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SWIFT
SWIB
SWIB_eIF2D
Motif
Other DBs
NCBI-GeneID:
130216218
NCBI-ProteinID:
XP_056304091
LinkDB
All DBs
Position
22:complement(8209626..8222183)
Genome browser
AA seq
510 aa
AA seq
DB search
MAARSGFQPATPGGGGAPMGPGPPVAGAGPGMVPGTPSGRMGPGGPQNHMYRSPMPGYPR
PGMPPASRMTPQGPSMGPPGYGASPVSRPGMPVMDPSRKRPAPNQIQQVQQQNRNQHAKK
KKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKRKLRIF
ISNTFNPAKPDAEDGEGTVASWELRVEGRLLEDTAVSKYEATKQKRKFSSFFKSLVIELD
KDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVGVRCTVLLMLDYQPPQYKLDPRLARLL
GIHTQTRPVIIQALWQYVKTHKLQDPHEREFINCDKYLQQIFETQRMKFSEIPQRLHALL
MPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIAGLDNKIH
ETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMTDVVGNPEEERRAEFYYQP
WAQEAVCRYFYSKVQQRRQELEQALGIRNT
NT seq
1533 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgcggagtggttttcagcctgcgacacccggtggcggcggagcccctatggga
ccaggcccgccagtagccggtgctggacccggtatggttcccggtacaccctcaggacgg
atgggaccaggcggcccgcagaaccacatgtaccgatcaccgatgcccggttacccgaga
ccaggaatgcctccagccagtcgtatgactcctcagggaccctccatggggcccccaggt
tacggggccagtcctgtttcccgccctggcatgccagtaatggacccgtcccgcaaacgt
ccagcgccaaatcagatacaacaggttcaacagcaaaatcgcaaccaacatgccaagaag
aagaaaatggcagataaaatactacctcaaagaatcagagagcttgtcccggagtctcag
gcttatatggacctgttggcgtttgagaggaagcttgaccaaaccattatgcgcaaacga
cttgatattcaggaagctctcaagagacccattaagcaaaaaagaaaactcagaatattt
atctccaacacattcaaccctgccaagccagatgcagaggacggcgagggaactgttgca
tcttgggagttgcgtgtggaggggcggcttcttgaagatactgctgtgtccaagtatgaa
gccaccaagcagaagaggaagttttcttcttttttcaagtctttagtgatcgagttggac
aaagacttgtatggacctgacaatcatttggttgagtggcacagaacagccacaactcag
gagacagatggatttcaggtcaagaggcctggggatgttggggtccgctgtactgtactg
ctcatgctggactaccagccccctcagtataagctggacccccgtctggcccggctgctg
ggtatccacactcagacccggcccgtgatcattcaggctttgtggcagtatgtgaagacc
cacaaactccaagaccctcatgaacgagagttcatcaactgtgacaaatacctccagcag
atttttgaaacccagaggatgaagttctctgagatccctcagcggctgcatgccctactg
atgcctccagaaccaatcatcatcaaccacgtcatcagcgtggatcccaatgaccagaag
aagactgcatgctatgatatcgatgtggaagtggacgacaccctgaagacccagatgaac
tctttcctgctttccacagccagtcagcaggagattgcaggcctcgacaacaagattcat
gagaccatcgaaaccattaatcaactgaagactcagagggagttcatgttgagctttgcg
cgagacccgcagggcttcatcaatgactggctccagtcgcagtgcagagacttgaagacg
atgacggatgttgtcggaaacccagaggaggaaagaagagccgagttctactaccagcct
tgggctcaagaggccgtgtgtcgttatttctattcaaaggtccagcaaaggagacaggag
ctggaacaggctcttggcattcgaaacacataa
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