Danio aesculapii (panther danio): 130221248
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Entry
130221248 CDS
T11734
Symbol
ddx42
Name
(RefSeq) ATP-dependent RNA helicase DDX42
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
daes
Danio aesculapii (panther danio)
Pathway
daes03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
daes00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130221248 (ddx42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
daes03041
]
130221248 (ddx42)
Enzymes [BR:
daes01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
130221248 (ddx42)
Spliceosome [BR:
daes03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
130221248 (ddx42)
Complex B
130221248 (ddx42)
Complex C
U2 SnRNP specific factors
130221248 (ddx42)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
130221248
NCBI-ProteinID:
XP_056309613
LinkDB
All DBs
Position
3:complement(31087412..31101995)
Genome browser
AA seq
903 aa
AA seq
DB search
MNWNKGGPSGKRGFGFGGFALATGKKEEPHLPQKAHSSFGGTGPPGGYGKNQQLSSFYKI
GTKRANFDEENAYFEDDEEESTADLPYIPAENSPTRKQFQSGGGGGGGGSDSEDDPLDAF
MAEVEDQAAKDMKKLEEKEKKMAKGIRDDIEEEDDQEAYFRYMAENPTAGLTQEEEEEEV
DYDSDGNPIAPTTKKIIMPLPPIDHSEIDYSPFEKNFYNEHEEISSLTVVEVEELKRKLN
LKVSGAAPPKPATSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPIALSGRDAIGIAKTG
SGKTAAFIWPILVHIMDQKELEQGEGPIAVIVCPTRELCQQIHAECKRFGKAYGLRSVAV
YGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATSLQRVTFLVFDEADRMFDMGFEYQ
VRSIASHVRPDRQTLLFSATFRKKIEKLARDILVDPIRVVQGDIGEANEDITQLVEVLQS
GQEKWGWLTRRLVEFTSAGSVLVFVTKKANCEELATNLIQEGYSLGLLHGDMDQSERNKV
IADFKKKNLPVLVATDVAARGLDIPSIRTVVNYDVARDIDTHTHRIGRTGRAGEKGVAYT
LLTTKDTIFAGDLVRNLEGANQSVTKDLMDLAMQNSWFRKSRFKGGKGKKINIRGGGLGY
RERPGLGSESSERSGGSIAAALGNYETFKPSTGAMGDRMSALKQAFQAQYKNHFVAASGV
PPKLTTKSSSSSGWTSAGSLSSLPTGAPEGPDRPHLSFSPSSSSSFSMPPPPALTSGIKM
SGFSSAGTLSSISDSYSSSSSKEPSRSERHSDDRGRHGDSHSHRHSDRYSSGGERERERD
RDRHGERDRHSDRDRHGDSRNGEGSHRDREGRSERDGGEKSGSHKDSFAVPDPPKRKKSR
WDN
NT seq
2712 nt
NT seq
+upstream
nt +downstream
nt
atgaactggaacaagggaggcccaagcggcaagcgagggtttggatttggaggattcgct
cttgcgactgggaagaaagaggagcctcatctcccacagaaggcccactcctcttttggg
ggaacgggacctccaggtggatatggcaagaatcagcagctatcgtcgttttacaaaata
ggaacaaaacgagccaatttcgacgaggaaaacgcttattttgaggatgatgaagaggag
tctactgctgacctgccgtatatacccgctgagaactctcccactagaaagcagttccag
tctggaggcggaggaggaggtggcggctcggacagtgaggatgaccctcttgatgccttt
atggctgaagtggaggaccaagcagcaaaggatatgaagaaacttgaggaaaaagagaaa
aagatggccaagggtattcgggatgacattgaagaggaagatgaccaagaagcatatttt
cgctacatggcggagaacccaacagctgggctgacccaagaggaggaggaggaagaagtg
gactatgatagtgatggaaaccctattgctcctactacaaaaaagattatcatgcccctg
ccccccatagaccactcagagatcgactattctccatttgagaaaaacttctataatgag
catgaggaaatcagcagtttgactgtggtcgaagtggaggaactgaaacggaaactcaac
ttaaaggtttcaggtgcagcccctcctaaaccagcaaccagttttgctcactttggattt
gacgagcagctcatgcatcagatccgtaaatctgagtacactcagccaacccccatccag
tgccagggtgttcccatagctttgagtggcagagatgcgatcggcattgccaaaactggc
agtggaaagacagcagccttcatttggccaattctggtgcacattatggaccagaaggag
ctggagcagggagaagggcccattgctgtgatcgtctgccccactagagagctctgtcaa
cagattcatgctgaatgcaagcgcttcgggaaggcatacggcctccgctcagtggcagtg
tatggaggtggcagcatgtgggaacaagccaaagccctacaggaaggagcggaaattgtt
gtctgcaccccaggtcgtctgatcgatcacgtaaaaaagaaggctacgtctctgcagcga
gtgacctttctggtgtttgatgaagccgatcgcatgtttgatatgggctttgaataccaa
gtgagatccattgccagccatgttcgacctgatcgacaaactctgttattcagtgcaact
ttccggaagaaaatcgaaaaactagcacgagatattttggtcgaccccattcgtgtggtg
cagggagacataggagaggctaatgaagacatcactcagttagtggaagtgctgcagtct
ggccaggagaaatggggttggctgacccgcagactggtggagtttacatccgctggctca
gtgctggtgtttgttactaaaaaggctaactgtgaggagctggcaacaaatttaattcag
gaaggatatagcctgggtctgcttcatggagacatggatcagagtgagaggaacaaagtc
attgcagactttaaaaagaagaatctgcctgtattggtagcgaccgatgttgctgctcgt
gggttggatattccatctatccgtactgttgtcaactatgatgtagcccgggacattgac
acacatacacatcgaattggtagaacaggtcgtgcaggagaaaaaggtgtagcttataca
ttgctcaccactaaagacactatatttgctggtgacctggttcgtaatttagagggagcc
aatcagagtgttacaaaagatctgatggacctggccatgcagaattcctggttcaggaaa
tctcgctttaagggaggaaaaggaaagaagattaatattagaggtggaggcttgggttac
agagagagacctggccttggatcagaatcctctgagcgcagtggtggttctattgcagca
gctcttggcaactatgaaaccttcaaaccctccaccggagcaatgggagaccgtatgtct
gccttaaagcaagcatttcaggctcagtacaaaaaccactttgtcgctgcatcaggtgtt
cctcctaaactcaccacaaagtccagcagctcatctggatggaccagtgcaggaagtctg
agttctttgccaacaggagcacctgaggggcctgacagaccccacctgtccttctcgcca
tcatcctcttcctcgttttccatgccaccgcctccagctctcacctcaggcattaaaatg
agtggcttcagcagtgcaggcaccctgagctcaatttcagactcttactcgagctcttct
tcaaaagagccatcccgtagcgagaggcattctgatgacaggggccgacatggagatagt
catagtcaccgtcatagtgacaggtatagtagtggaggagaacgagaaagagagcgtgat
cgcgatcgccatggggaaagggaccgccatagtgacagagatcggcatggggatagccga
aatggtgaagggagccatagggacagagagggacggtcagaaagagatgggggtgagaag
tcaggatctcacaaagacagctttgcagttcctgatccccccaaacgtaagaaaagcaga
tgggacaattga
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