KEGG   Danio aesculapii (panther danio): 130225567
Entry
130225567         CDS       T11734                                 
Symbol
pdcd11
Name
(RefSeq) LOW QUALITY PROTEIN: protein RRP5 homolog
  KO
K14792  rRNA biogenesis protein RRP5
Organism
daes  Danio aesculapii (panther danio)
Brite
KEGG Orthology (KO) [BR:daes00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:daes03009]
    130225567 (pdcd11)
Ribosome biogenesis [BR:daes03009]
 Eukaryotic type
  90S particles
   Other 90S particles
    130225567 (pdcd11)
SSDB
Motif
Pfam: S1_RRP5 S1 OB_PDCD11 Spt6_S1 HAT_PRP39_N HAT_Syf1_CNRKL1_N HAT_PRP39_C OB_RRP5_4th Suf TPR_14 TPR_19 HAT_Syf1_CNRKL1_C PRP6_TPR CFAP70_mid_TPR DUF8501 ARM_TT21 DUF2110 TPR_16 PPR ARM_TT21_N TPR_12 TPR_YpiA_C ARM_TT21_5th CFAP70_TPR_C TPR_CcmH_CycH
Other DBs
NCBI-GeneID: 130225567
NCBI-ProteinID: XP_056312538
LinkDB
Position
1:complement(11375361..11424723)
AA seq 1818 aa
MASMEEDFPRGGTERKKPTDLIPHDVDNLFDTPGKAIKKKKKAVKQDEAPKPKKQKVDEE
NIKLNTTTTVQILHLRDLRVGTLMLGCVKEVSDFEVVVGLPSGLVGYLPICNICDAYTNI
LNDKLDTDDGLEEVVPLSKLFTPGMLIRCVVSSLDSAKEGHISLKLSINPKDVNKALNSA
ALKPGMTLSGCVESVEDHGYLVDIGIDGTKAFLPKKSTSSKQDLNVGQYTLVLIEDVKDS
GRVVRLSQNPQALVKACAETKQGWTLDNLLPGLLIHGLVKRVTPHGLIVTFLSSFTGVVD
FLHLDEDKASTYSQGDEVLARVLYIQPLTHQVGLSLRSHLLPPGGAVLDLHVSERVGEVV
QGCQMTSLHHYSGALMKMLDGNRAFVHKNLLKESKEELNTNHLMSQTEHILRIMNYSPIE
QIYQATLRWSAIETPFFSYQDFKVGQIVECTVTDLQKHGIYVRIGEHIRGMIPRIHLADV
TLKNPEKKFYPGLIVKCRVLSVEAQKKLLILTRKKALVESTLPIFQSYSDARPGRISHGF
VVCVKEFGCIVRFYEDVKGLVPMQELTTETVTNLEELFFVGQVVKVKVLKCDVEKKMLRL
SFKSVTEEDIKEEQIAKFDFIVGKMVDARVCRKVLNGLEVSIIPEEVQAFLPTTHLSDHV
TNCLPLWMALEEGDTICNLMCLTNYKKKGIVLTKKPHLKAYLEDSAVPKNFSELQVGMQM
VGWVKNIMPYGVFISFPYGVFGLAPKANMGDQFIKETSGIFDIDQTVVAKVTNLDEEKQR
FLVSLKLSELSLSENEFHTRLIQGLKERRNISEMRAGRGDSDVLQKLSALTVGDKMKMIV
GDTNEDGSVMLTSDQLSGVTVLASKYHKEGVNLTPGCKLNAVILHVDFVKSQVHVSLRPK
LIIKKEKLEKDARFTAKVQFADKDFAVVSLATTSDLTFFPTRPHLNSIFDSKQFSVGSCL
DVKVDDPNCEDLAGFPLISYQFMNAKREVHTPNEERLGELMKVTVTKVKALCVLVNLPSG
NTGRVHVSQILEFPDIGSCPTAVLRVGMEMEARVIGGRSVRAHNFLAISHPDYNISIPEL
SFLESKLKVSDMVNKLXKYKPGDEVICFPSKYSKETQLLEVHVKPNIMGTIPLLAMCNKL
GLSKHPQRLFKPGQALSAKVVSVDPKKPFQFSLSLTGTHKLEPGMNTLAMVQKVVPHKGL
MLTLPYENTGLAQLTDLSDSYMEKPLESYKRGQIIRCHVIEKRKNEFSVSLRPSRLNKDK
HEIVADPEIQSIADIKEGQNIRGYVSSVNDQGIFLRLSRTITEEFCFQNATKYYMNDPKV
LIEHVGQNALVGKVLSVDSANLHVNLSLLSKDTGKPDLLPESLELPLRLTGEEKEKHDKK
AAVKRKKTLSESQQQDNEIPAQKTKRIKVDDECRLIEEPTEQTKTLEKEKKKKKKSKKED
SDSGVEVFFRETDETVPDKKSAKVKVKCKEEEPNRLQVTSRFPWESTLGSLTPFAPADDN
QNSSEDEEEVKSKQPRLKKSRKELKQEQQNTEQKLSKLEAELMDTSVRPDSSTAFERLLL
SSPDSSLLWLQYMAFHLQATQIEQARAVAERALKTISFREEQEKLNIWVAMLNLENMYGT
PDSLQKVFERAIQYCEPLLVYQQLADIYAKSEKIKEAESLYKSMVKRFRQDKAVYLSYGX
FLLRQRQSDAANALLQRALQSLSSKEHVDLIAKFARLEFQFGNSEKAKSMFDKVLTTYPK
RTDLWSVFIDLMVKHGSQKEVRELFDRVIHLSVSVKKIKFFFKRYLEYEKKNGTPETIQV
VKQKALEYVESKGAEATS
NT seq 5451 nt   +upstreamnt  +downstreamnt
atggcatctatggaagaagattttccccgtggaggtaccgagaggaaaaaacccaccgac
ctaatcccacatgacgtggacaatctttttgatacacctggaaaagcgattaagaagaag
aagaaggctgtgaagcaggatgaagcgccaaaacctaaaaaacagaaagtggatgaagag
aatatcaaactcaacacgaccaccactgtccaaattctgcatcttagggatctgagggtt
ggcactctaatgctgggttgtgtgaaggaagtgtcagattttgaggttgtagtcggtctc
ccaagcggcctcgttggttacctgccgatctgcaacatctgtgatgcctacaccaacatt
ctcaatgacaaactggacactgatgatggcctagaggaagttgtccctctttccaaactc
ttcactcctggaatgctgatcagatgtgtcgtgtcgtctttagactctgccaaagagggt
catattagccttaaattgtcaatcaacccaaaagatgtgaacaaggcattgaattcagct
gctttaaagcctggaatgacactgagcggctgtgtggagagtgttgaagatcacggctac
ctggtggacatcggaattgacggcactaaagctttcctgcccaaaaagagcacatcctca
aaacaagatctgaatgtgggtcagtacacgctggtcctgatagaggatgtcaaggatagt
gggcgtgtggtgcgcctgtcccagaatccccaggctcttgtaaaggcctgcgcagagacc
aagcaaggatggactttagacaacctccttcctggactgctgatccatggactggtcaag
agagtcactcctcacggacttatagtgacgtttctttcatctttcactggagtggtggat
tttctgcaccttgacgaggacaaggcgtctacttacagccaaggagatgaggtcctggcg
cgggttctgtacattcagcctttgacccaccaagtgggtctctctctgcgcagtcatctg
ctgccaccaggcggcgctgtgctggatctgcacgtcagtgagcgagtgggtgaggtggtg
cagggctgtcagatgactagtttacaccattactcaggagccctgatgaagatgcttgac
ggtaacagagcctttgtgcataaaaacctgctgaaggagtccaaagaagagctcaacaca
aaccacttgatgtcccagactgagcatattctgaggatcatgaattacagtccaatagag
cagatctaccaggccacgctccgctggagcgctattgaaacgccgttctttagctatcaa
gacttcaaagtgggacaaattgttgagtgtacagttacggatttgcagaaacatggcatt
tacgtgaggattggggagcacattagagggatgatacccagaattcacctggccgatgtc
accctgaagaacccagagaaaaaattttatccgggtctgatagtcaagtgcagggttttg
tcagtggaggctcagaagaagctgttgatcttgaccaggaagaaggctcttgtggagtcc
acgctccccatctttcagtcgtattctgacgcccggccgggccgcatttctcatggcttt
gtcgtgtgtgtaaaggagtttggctgcatcgttcgcttttatgaagatgtgaagggtctg
gttcccatgcaggagctgaccactgaaacggtcacaaatctagaggagctcttcttcgtt
ggacaggttgtcaaggtcaaagtgttgaagtgcgacgtggaaaaaaagatgctccgattg
tccttcaagtctgttaccgaggaggatatcaaagaggagcagatcgccaaatttgacttc
attgttggaaagatggtcgacgcaagagtgtgccgaaaagtcctgaacggtcttgaggtc
tccattattcctgaggaagtgcaagctttcctacccacaacacatctctctgatcatgtg
accaactgtttgcccctgtggatggcgctggaggaaggcgacaccatctgtaatctgatg
tgtctcaccaactacaaaaagaagggcattgttctcaccaagaaaccgcacctgaaggct
tatcttgaggacagcgccgtcccgaagaacttctcggagctccaggtggggatgcagatg
gtcggctgggtgaagaacatcatgccgtatggcgtcttcatcagtttcccttacggagtc
ttcggccttgctcctaaagccaacatgggtgaccagttcatcaaggaaacctcaggcatc
tttgatattgaccagacggttgtggccaaggtgactaatctagatgaagaaaagcaaagg
tttctggtcagtctgaagctgtctgaactgagtctctctgagaacgagtttcacaccaga
ctgattcagggtctgaaggaaaggaggaatatttcggagatgagggctggcagaggggac
tctgacgtcctgcagaagctctctgctctaaccgtaggagataaaatgaagatgattgtg
ggagatactaatgaggatggttcggtcatgttgacctcagatcagctcagtggtgtcact
gtattggcctcaaagtaccacaaagaaggtgtgaatttgactccgggttgcaaactcaac
gcagtaattctccacgttgactttgtaaagtctcaagttcatgtatcgctgcgtccaaag
ctgatcataaagaaagagaagttggaaaaggacgccagattcacagcaaaagtccagttt
gccgacaaagactttgctgtcgtttcattggctaccaccagtgacctgaccttctttccc
acccgccctcatttaaacagcatttttgactccaagcagttttccgttggctcctgtttg
gatgtgaaagtcgatgatcccaactgtgaggatttagcaggctttccacttatttcgtat
cagtttatgaatgccaaacgcgaggttcacacacccaacgaagagcgtctcggggagctg
atgaaggttacggtgacgaaagtgaaggcgctctgtgtgttggtgaatctgccgtcggga
aacactggaagagtccacgtttcacagatattggagtttcctgacatcggcagctgccca
acagctgttcttagggtcgggatggagatggaggcccgagtgatcggaggacgttcagtt
cgtgcccacaacttcctggcgatctctcatcccgattataatatctccatccctgagctc
agttttctagaaagtaaactgaaggtttcagacatggtgaacaaacgaaaatacaaacct
ggagatgaagtcatatgcttcccgtcaaaatacagcaaagaaacgcagctcttggaagtt
catgtgaagcccaacatcatgggaaccattcctctgttagccatgtgtaacaaacttggg
ctctccaaacacccgcagaggctttttaaaccaggacaggccctttctgcaaaggttgtc
agtgttgatcccaaaaagcctttccagttttccctgtctctcacagggacgcacaaactg
gagccaggcatgaacaccttggccatggttcagaaagtcgtgcctcacaagggactgatg
ctcacgctcccatatgagaatacgggtcttgctcagctaacggatctctctgattcatac
atggagaagccactggagtcctacaaacggggccagatcatccggtgtcatgtcatcgag
aagaggaaaaacgaattcagcgtttcgttacgtccctccagactgaataaggacaagcat
gaaattgtagcagacccagaaattcagtcaattgctgatataaaagagggtcagaatatc
agaggatatgtgtcgtctgttaacgaccagggcatatttctaaggttatcgaggactata
acagaagagttctgtttccaaaatgctacgaaatactatatgaatgacccaaaagtcctt
attgaacacgttggccagaatgcattggtgggcaaggttctaagcgtggactctgcgaac
ctccatgtgaacctgtcgctgctgtcaaaagacactgggaaaccagatctgctcccagaa
tctctggaactgccactgcgtctgacaggagaagagaaggagaaacatgacaaaaaagct
gctgtcaagaggaagaaaactctttctgagagccagcagcaagacaatgagattcctgca
cagaagaccaaacggataaaagtcgacgacgaatgcagactgattgaagaacccacagaa
cagacgaaaacgctggagaaggagaagaaaaagaaaaagaaatcgaaaaaggaggacagt
gacagtggtgtagaggtgttcttcagagagacggatgagactgtgccggataaaaagtca
gccaaagtaaaggttaaatgcaaggaagaggaaccaaaccggcttcaagtgacatctagg
ttcccatgggagtccacactgggctctttaacaccttttgccccagcagacgacaaccag
aactccagtgaggatgaggaggaagtcaagagcaagcaaccccggttgaagaagtcccgt
aaagagctgaagcaggagcagcagaacacagagcaaaagctcagcaagctggaagctgag
ctcatggacacgtctgtacggcctgatagctcgacagcgtttgagcgtctgctcctgtcg
tctcccgacagctccctcctctggttgcagtacatggctttccatctacaggctacgcag
atcgagcaggcccgtgcggtcgccgagagagccctcaaaaccatctccttcagagaggag
caggagaagctgaacatttgggtggccatgctgaatttggagaacatgtacgggacacca
gacagcttgcagaaagttttcgaacgggccatccagtattgtgaacctcttcttgtttac
cagcagctggccgacatttatgccaagtcggaaaagatcaaagaggctgagagtctttat
aaaagcatggtgaagcgtttcagacaggacaaagcagtttatctgagttacgacttcctg
cttcgacaacggcaaagcgacgctgccaatgctcttctgcagagggcgcttcagagcctg
tcgagtaaagaacatgtggacctcattgccaaatttgctcggctggagtttcagtttggg
aattcagagaaagccaagtctatgttcgacaaggtcctcactacataccccaaacgcaca
gacctgtggtctgtcttcatagacttaatggtgaagcacggctctcagaaggaagtgagg
gagctttttgatcgcgtgattcacctgagtgtgtcagtgaagaagatcaagttcttcttc
aagcgttacctggagtacgagaagaagaacggcacacctgagaccatccaagtggtcaaa
cagaaagctctcgaatatgtggagtccaaaggagctgaagccactagctaa

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