Danio aesculapii (panther danio): 130234477
Help
Entry
130234477 CDS
T11734
Symbol
prpf40a
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A
KO
K12821
pre-mRNA-processing factor 40
Organism
daes Danio aesculapii (panther danio)
Pathway
daes03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
daes00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130234477 (prpf40a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
daes03041
]
130234477 (prpf40a)
Spliceosome [BR:
daes03041
]
Complex A
U1 snRNP components
U1 related factors
130234477 (prpf40a)
Complex B
130234477 (prpf40a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FF
FF_PRPF40A
WW
WW_TCERG1
FF_RHG35_4th
CEP164_N
Glyco_hyd_101C
PTPlike_phytase
Motif
Other DBs
NCBI-GeneID:
130234477
NCBI-ProteinID:
XP_056320667
LinkDB
All DBs
Position
9:5274046..5327593
Genome browser
AA seq
851 aa
AA seq
DB search
MMGPPGIPPHFPPMGMPPMGQRPPSLAPMPPGIMPPMMPPMGAPPIGQMPAMMPPMMPGM
MMPPRLPAASIQPTGPPGVSPVEAAAPAAPGTTSTTSTESSPDEQPKKKSVWTEHKSLDG
KIYYYNTETKQSTWEKPDELKSPAEQMLSKCPWKEYKSDTGKPYYYNSQTKESRWTKPKE
LEDLEAMIKAEENGTADVVAPGTTPALTAQSESSVTVAPVAETEATMVTGTIEEQPSHVP
AQAVEVSSDVAVNSTEETPSVETQPSNDVSKEERPELVKKVYKWNTKEEAKQAFKELLKE
KGVSSNASWEQAMKLIINDPRYSALPKLSEKKQAFNAYKVQTEKEEKEEARIKYKESKET
FQRFLENHEKMTSTTRYKKAEQMFGDQEVWSCVPERDRLEIYEDVLFYLAKKEKEQAKQL
RKRNWEALKNILDNMANVTYRTTWSEAQQYLLDNPTFAEDEELQNMDKEDALICFEEHIR
ALEKEEEDEKQKTLLRERRRQRKNRESFQKFLDELHDHGQLHSMSAWMEMYPTISADIRF
SNMLGQPGSTPLDLFKFYVEDLKARYHDEKRIIKDILKDKGFLVEINTGFEDFGSVISSD
KRATTLDAGNIKLAFNSLLEKAEAREREREKEEARKMKRKEAAFKSMLKQATPPLEPEAT
WEGVRERFLKEPAFEDITLESERKRIFKDFMHVLEHECQHHHSKTKKHSKKSKKHHRKRS
RSRSGSESEDDEYHTKKKKRSTSKSPSEHSSSGESERSYKKSKKHKKKGKKRRHKSGSPE
SEGERERKGREKDKDKENDKSRAKLRGESKQKSPKRKSAKEEGGWDTSGSELSEGELEKR
RRTLLEQLDAP
NT seq
2556 nt
NT seq
+upstream
nt +downstream
nt
atgatggggccaccaggaatcccgcctcacttccctccaatgggaatgccacccatgggc
cagaggccgcccagcctggctcccatgcccccgggaataatgccacccatgatgcctcca
atgggcgctccaccaattggacagatgccagccatgatgccaccaatgatgcctggaatg
atgatgccacctcgtctgccagctgcatcaatccagcctacaggaccgcctggtgtgagt
ccagtggaggctgcagctccggctgctcctggaacaactagcaccacatcaaccgagtct
tcacctgatgaacagccaaaaaagaagtcagtgtggaccgagcacaaatctctggatgga
aaaatctactactacaacacagagaccaaacaatccacctgggagaaaccagatgaactc
aaatcacccgcagagcaaatgttgtcgaaatgcccatggaaagagtataagtcagacacc
ggaaagccctattactataactcacagaccaaagagtctcgctggactaaacccaaagaa
ctggaagacctggaagctatgataaaggcagaggaaaatgggacggctgatgttgtggct
cctggcaccacccccgctcttacagctcagagcgagtcttctgttactgtggcgccggtt
gctgagacagaggctaccatggtgactggcaccatcgaggaacagccttctcacgtgcct
gcgcaggctgttgaggtcagcagtgatgtcgctgtgaactccactgaggaaacgcccagc
gtggagacccagcctagtaacgacgtttcaaaggaggagagacctgagctggtgaagaaa
gtttacaagtggaatacaaaagaggaggcgaagcaggcctttaaagaactcctgaaagaa
aagggcgtttcttccaatgcatcatgggagcaggcaatgaagctgataattaatgaccct
cgttacagtgctctgcccaagctgagtgagaagaaacaggcgttcaatgcttataaagtg
cagacagaaaaagaggaaaaggaagaagccagaataaaatacaaggagtctaaagagact
ttccaacgcttcctggagaaccacgagaagatgacgtcaaccacacgatacaagaaagcg
gagcagatgtttggagatcaagaggtttggtcgtgtgttccagagagagaccggctggag
atctatgaagatgtgcttttttatttggcaaagaaagagaaggaacaagctaaacagctg
aggaagaggaactgggaagcactgaagaacattctggacaatatggccaatgtgacatac
agaacaacatggtctgaggcgcaacagtacctgctggacaatcccacatttgctgaagac
gaggagctacagaacatggacaaggaagatgcgctgatctgttttgaggaacacatccgt
gcgcttgagaaagaggaagaagatgagaagcagaaaactctgctgcgcgagagacgtcga
cagcgcaagaacagagagtctttccagaaattcctggatgagcttcatgatcatgggcag
ctgcactccatgtctgcttggatggagatgtacccaaccatcagtgccgatattcgcttc
agcaacatgctgggccaaccaggctccacgcctctggacttattcaagttttacgtggag
gatctgaaagctcgttaccatgatgagaagagaatcattaaagacatcctgaaggataaa
ggtttccttgtggagatcaacacaggctttgaggactttggctcagtgatcagctctgat
aaacgcgccaccacacttgatgcaggaaacatcaaactggccttcaacagtttgctcgag
aaggctgaagcacgagagcgggaacgggaaaaagaagaggccagaaagatgaagaggaag
gaagcggcatttaagagcatgttaaaacaggccacaccccctctagaacccgaggcaacg
tgggagggagtacgagagcgcttcctgaaagaaccagcttttgaagacatcacgctggag
tcagagaggaagagaatattcaaagacttcatgcacgttctagagcacgagtgtcagcat
catcactccaagacgaaaaaacactccaagaaatccaagaaacaccacaggaagcgttcc
cgatctcgatcaggctcggagtcagaggatgatgagtatcacacaaagaagaagaaacgt
tcaacatctaaatctccatctgagcactcgtcctctggggaatcagagagaagttacaag
aaatcgaagaaacacaagaagaagggaaagaaaagacgacataagtctggttcccctgag
tctgaaggagagagagagcggaaaggaagagagaaggacaaagataaagagaacgacaaa
tccagagccaagctgcgcggagaatccaaacagaaatcccccaaaagaaagagcgctaaa
gaagagggtggatgggatacgtctggcagtgaactgagtgaaggagagctggagaagagg
aggcgcacacttctagagcagctggatgctccgtaa
DBGET
integrated database retrieval system
